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Streptomyces avermitilis MA-4680 (save0)
Gene : gcdH1
DDBJ      :gcdH1        putative glutaryl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  508/915 : Eukaryota  165/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:413 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->406 2ix6A PDBj 7e-89 43.5 %
:RPS:PDB   36->404 2dvlA PDBj 7e-66 35.5 %
:RPS:SCOP  28->258 1siqA2  e.6.1.1 * 2e-55 33.2 %
:RPS:SCOP  259->411 1siqA1  a.29.3.1 * 1e-25 34.9 %
:HMM:SCOP  22->258 1w07A3 e.6.1.2 * 2.2e-62 38.6 %
:HMM:SCOP  256->406 1bucA1 a.29.3.1 * 7.3e-36 37.7 %
:RPS:PFM   40->144 PF02771 * Acyl-CoA_dh_N 5e-10 33.3 %
:RPS:PFM   152->202 PF02770 * Acyl-CoA_dh_M 8e-10 58.0 %
:RPS:PFM   266->402 PF00441 * Acyl-CoA_dh_1 3e-19 39.4 %
:HMM:PFM   263->404 PF00441 * Acyl-CoA_dh_1 6e-31 33.1 142/150  
:HMM:PFM   152->203 PF02770 * Acyl-CoA_dh_M 1.6e-21 54.9 51/52  
:HMM:PFM   38->146 PF02771 * Acyl-CoA_dh_N 2.2e-20 28.4 109/113  
:BLT:SWISS 27->406 ACOX4_ARATH 2e-88 43.5 %
:PROS 154->166|PS00072|ACYL_COA_DH_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68429.1 GT:GENE gcdH1 GT:PRODUCT putative glutaryl-CoA dehydrogenase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(871760..873001) GB:FROM 871760 GB:TO 873001 GB:DIRECTION - GB:GENE gcdH1 GB:PRODUCT putative glutaryl-CoA dehydrogenase GB:NOTE PF00441: Acyl-CoA dehydrogenase, C-terminal domain GB:PROTEIN_ID BAC68429.1 LENGTH 413 SQ:AASEQ MRETAVSGTTTLPAPSGPYLDKGLLPADFFAYEELLSDGEREQLESVREFLRTQVAPIVDDYWARAEFPFQLVEGFGRLGLMDWADPDSPESRPSNLLAGFLALELAHVDASVATFAGVHTGLAMGTILTCGSDEQKRRWLPAMSRFEKIGAFGLTEPHGGSDVAGGLQTTARRDGDTWILDGAKRWIGNATFADLVVIWARDVETRHVLGFVVEKDTPGFTATKIENKMALRIVQNADIVLDGCRVPEANRLQNAHSFKDTAKILRQTRSGVAWQAVGVMFAAYEIALQYTKEREQFGRPIGGFQLVQDLLVKMLGNATASCGMMTRLAQLQDAGVFRDEQSALAKAYCTVRMRENVGWARELLAGNGILLDYKVGRFVADAEAIYSYEGTREIQTLIVGRAVTGGLSAFVR GT:EXON 1|1-413:0| BL:SWS:NREP 1 BL:SWS:REP 27->406|ACOX4_ARATH|2e-88|43.5|379/436| PROS 154->166|PS00072|ACYL_COA_DH_1|PDOC00070| BL:PDB:NREP 1 BL:PDB:REP 27->406|2ix6A|7e-89|43.5|379/416| RP:PDB:NREP 1 RP:PDB:REP 36->404|2dvlA|7e-66|35.5|366/370| RP:PFM:NREP 3 RP:PFM:REP 40->144|PF02771|5e-10|33.3|105/113|Acyl-CoA_dh_N| RP:PFM:REP 152->202|PF02770|8e-10|58.0|50/53|Acyl-CoA_dh_M| RP:PFM:REP 266->402|PF00441|3e-19|39.4|137/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 263->404|PF00441|6e-31|33.1|142/150|Acyl-CoA_dh_1| HM:PFM:REP 152->203|PF02770|1.6e-21|54.9|51/52|Acyl-CoA_dh_M| HM:PFM:REP 38->146|PF02771|2.2e-20|28.4|109/113|Acyl-CoA_dh_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 28->258|1siqA2|2e-55|33.2|229/236|e.6.1.1| RP:SCP:REP 259->411|1siqA1|1e-25|34.9|152/154|a.29.3.1| HM:SCP:REP 22->258|1w07A3|2.2e-62|38.6|236/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 256->406|1bucA1|7.3e-36|37.7|151/151|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 5067 OP:NHOMOORG 703 OP:PATTERN 22----5655755645-133431D96661-7B-----------------------------3541--- 4556M3-5111744NjXEE-EW33VbEEEEEJZXZXOg**4P8X2143-12-768668--B8O1ECRHHJE--------384B-----11111122---41545564545--------------------------66588---A3-1-1------------------12-------------67766--1C735555545555555553455545556A98A11------52-111111-11111111---1--1------------------------------------------------------------------111315444444444423222221-6-3-4-13-991596-17---11-3-61-EBBH-----1-NGH332ICKJD88787886755-22932E3B77M-3332425445458A7E78A96666A8D11111111B----774------------------------------DEQE17NEAJ879BI96455577G8999949H5MNaXS14AA674899GABEDT-16----34---------1C543TAB-----------755-8-5--7777B865---------------------------32-382549313333332633336363354---1---------2-4-1--2223233222-2222222212222222221-------13231333332313113-1121111-----------------3111115555-H9-----------------DDCBD9C4653-EEFG6D89C86788425-------------2-----24-224444444444-------2AA8778----------1-------------------------1--11-1------ ----667-731-786866675556357882646645765666657784445678334433335--------------------------5A6676654446878A9-A54HDUABED68657B8EA4G8S*C-EAL6975C77DA3A877B63D9AA9K8DC6GCD877BCEHCF2251O21144668D73444DAA98 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 393 STR:RPRED 95.2 SQ:SECSTR ##################HHHHHTTcccTTcGGGGccHHHHHHHHHHHHHHHHTHHHHHHHHHHTTcccHHHHHHHHHTTGGGTTccGGGTcccccHHHHHHHHHHHHHcHHHHHHHHHHTcHHHHHHHHHccHHHHHHTHHHHHTTcccEEEEcccccccccGGGTcccEEEEETTEEEEEEEEEEEETTTTccEEEEEEEEcETTEEEEEEEETTcTTEEEcccccccccTTccEEEEEEEEEEEEGGGEEcTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGcGGGcHHHHHHHHHGGGTTTccHHHHHHHHHHHHHHccccc## DISOP:02AL 1-18| PSIPRED cccccccccccccccccccccHHHccHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHccHHHHHHHcHHHHcccEEEEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccEEEEEccEEEEHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc //