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Streptomyces avermitilis MA-4680 (save0)
Gene : gcdH2
DDBJ      :gcdH2        putative glutaryl-CoA dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  509/915 : Eukaryota  166/199 : Viruses  0/175   --->[See Alignment]
a.29.3e.6.1
:403 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->402 2ix6A PDBj 7e-91 41.9 %
:RPS:PDB   26->396 2d29A PDBj 4e-67 30.1 %
:RPS:SCOP  18->245 1siqA2  e.6.1.1 * 3e-56 36.6 %
:RPS:SCOP  256->402 1siqA1  a.29.3.1 * 2e-27 36.1 %
:HMM:SCOP  12->250 1w07A3 e.6.1.2 * 6.1e-62 39.0 %
:HMM:SCOP  251->404 1siqA1 a.29.3.1 * 3.5e-39 38.3 %
:RPS:PFM   30->136 PF02771 * Acyl-CoA_dh_N 2e-13 43.3 %
:RPS:PFM   144->196 PF02770 * Acyl-CoA_dh_M 1e-11 59.6 %
:RPS:PFM   258->394 PF00441 * Acyl-CoA_dh_1 6e-21 39.4 %
:HMM:PFM   253->396 PF00441 * Acyl-CoA_dh_1 2.9e-30 31.2 144/150  
:HMM:PFM   144->194 PF02770 * Acyl-CoA_dh_M 3.9e-22 58.0 50/52  
:HMM:PFM   28->138 PF02771 * Acyl-CoA_dh_N 7.3e-22 35.2 108/113  
:BLT:SWISS 1->402 ACOX4_ARATH 2e-90 41.9 %
:PROS 146->158|PS00072|ACYL_COA_DH_1
:PROS 355->374|PS00073|ACYL_COA_DH_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69057.1 GT:GENE gcdH2 GT:PRODUCT putative glutaryl-CoA dehydrogenase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1661612..1662823) GB:FROM 1661612 GB:TO 1662823 GB:DIRECTION - GB:GENE gcdH2 GB:PRODUCT putative glutaryl-CoA dehydrogenase GB:NOTE PF00441: Acyl-CoA dehydrogenase, C-terminal domain GB:PROTEIN_ID BAC69057.1 LENGTH 403 SQ:AASEQ MTALLPEKTSVDERLAADFYDIESLLPPHERELLTHARAFMRTEVKPLVNEYWAKGEFPRELIGKFRDLGLAGVPYEGYGDPLPAGSNLLVGMLSMEYTRTDASSATFFGVHSGLAMYSIYRGGDQEQRDRWLPSMAALDTIGAFAMTEPLGGSDVAGGMRTTARRDGENWVLNGAKRWIGNATFADLVVVWARDEADGKVKGFVVEKGTPGFSPVKIENKIAFRIVENAEITLTDVKVPEANRLQRIDSFRDVAEILRATRSGVAWQALGVMLGAYELALGYAKERKQFGRPIARFQMVQDLLVKSLGNITACWGMLVQLARLQDAGVFRDEHSSLAKAFVTSRMREVVAWCREIFGGNGIVLDYDIARFFADAEAIYSFEGTREMNTLIVGKAVTGESAFV GT:EXON 1|1-403:0| BL:SWS:NREP 1 BL:SWS:REP 1->402|ACOX4_ARATH|2e-90|41.9|399/436| PROS 146->158|PS00072|ACYL_COA_DH_1|PDOC00070| PROS 355->374|PS00073|ACYL_COA_DH_2|PDOC00070| BL:PDB:NREP 1 BL:PDB:REP 1->402|2ix6A|7e-91|41.9|399/416| RP:PDB:NREP 1 RP:PDB:REP 26->396|2d29A|4e-67|30.1|369/386| RP:PFM:NREP 3 RP:PFM:REP 30->136|PF02771|2e-13|43.3|104/113|Acyl-CoA_dh_N| RP:PFM:REP 144->196|PF02770|1e-11|59.6|52/53|Acyl-CoA_dh_M| RP:PFM:REP 258->394|PF00441|6e-21|39.4|137/150|Acyl-CoA_dh_1| HM:PFM:NREP 3 HM:PFM:REP 253->396|PF00441|2.9e-30|31.2|144/150|Acyl-CoA_dh_1| HM:PFM:REP 144->194|PF02770|3.9e-22|58.0|50/52|Acyl-CoA_dh_M| HM:PFM:REP 28->138|PF02771|7.3e-22|35.2|108/113|Acyl-CoA_dh_N| GO:PFM:NREP 6 GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02771|IPR006092| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02771|IPR006092| GO:PFM GO:0003995|"GO:acyl-CoA dehydrogenase activity"|PF02770|IPR006091| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02770|IPR006091| GO:PFM GO:0016627|"GO:oxidoreductase activity, acting on the CH-CH group of donors"|PF00441|IPR006090| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00441|IPR006090| RP:SCP:NREP 2 RP:SCP:REP 18->245|1siqA2|3e-56|36.6|224/236|e.6.1.1| RP:SCP:REP 256->402|1siqA1|2e-27|36.1|147/154|a.29.3.1| HM:SCP:REP 12->250|1w07A3|6.1e-62|39.0|236/0|e.6.1.2|1/1|Acyl-CoA dehydrogenase NM domain-like| HM:SCP:REP 251->404|1siqA1|3.5e-39|38.3|154/154|a.29.3.1|1/1|Acyl-CoA dehydrogenase C-terminal domain-like| OP:NHOMO 5309 OP:NHOMOORG 705 OP:PATTERN 33----6744544546-143421D96661-7B-----------------------------3551--- 4556N3-5111845PgXHH-HW33WaHHHHHLUZfZRf**4T8X1133-11-768669--CAR1DESJIHE--------374B-----11111122---41545664555--------------------------66588---C3-1--------------------12-------------67867--1D735555545555555553555545567BA9A11------53-111111-11111112---1--1------------------------------------------------------------------111315444444444423222221-6-3-4-13-991596-17---11-3-61-EDDI-----1-PGH332KCLJF77676774645-22922C3976K-4333424445458B7I88995555B7C111111119----764------------------------------EFOH17NDAJ879BF96677666G9CCCC5AH5PMbXU14CB874999HADDFU-17----34-------1-1B542SBC-----------755-8-5--7887CA65---------------------------32-47154B413222233622226263243---1---------2-3-1--2223233222-2222222212222222221-------13231333332313113-1121111-----------------3111115555-GA1----------------DDCBD894654-GGGI6D89B87788425-------------2-----24-224444444444-------2999899----------1-------------------------1--11-1------ ----558-731-986CB97A898A78AA948687679766677899866678AA776645556---------1----------------7B6B8767665794BBB-C64FDRABFD7886AC9GC5G7Q*C-CAM6975C78FB3A868C73C9BB9KBHI7GBD777BBEGAH2232O31355667C73744C9998 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 403 STR:RPRED 100.0 SQ:SECSTR HHHHcTTccTcHHHHTccTTcGGGGccHHHHHHHHHHHHHHHHHTGGGHHHHHHHccccHHHHHHHHTTTGGGccccGGGGTcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHTHHHHHHHHccHHHHHHHHHHHHTccccEEEEcccTTccccGGGTcccEEEEETTEEEEEEEEEEEETTTTccEEEEEEEccccccGGGEEEEcccccEEEcccccccccTTccEEEEEEEEEEEEGGGEEccTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEETTEEGGGcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGcTTccHHHHHHHHGGGGTTTccHHHHHHHHHHHHHcccccH DISOP:02AL 1-7| PSIPRED cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccEEEEEccEEEcHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccc //