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Streptomyces avermitilis MA-4680 (save0)
Gene : hopB
DDBJ      :hopB         polyprenyl diphosphate synthase
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  815/915 : Eukaryota  124/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:376 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   117->281 1wy0A PDBj 2e-29 38.2 %
:RPS:PDB   117->372 3b7lA PDBj 1e-34 18.3 %
:RPS:SCOP  117->354 2q80A1  a.128.1.1 * 1e-34 22.6 %
:HMM:SCOP  49->376 1ubyA_ a.128.1.1 * 6.6e-76 37.7 %
:RPS:PFM   117->280 PF00348 * polyprenyl_synt 6e-24 43.6 %
:HMM:PFM   84->315 PF00348 * polyprenyl_synt 5.5e-57 41.2 228/260  
:BLT:SWISS 47->375 GGPPS_MYCTU 5e-49 39.6 %
:PROS 123->137|PS00723|POLYPRENYL_SYNTHET_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69362.1 GT:GENE hopB GT:PRODUCT polyprenyl diphosphate synthase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(2022306..2023436) GB:FROM 2022306 GB:TO 2023436 GB:DIRECTION - GB:GENE hopB GB:PRODUCT polyprenyl diphosphate synthase GB:NOTE squalene/hopene gene cluster, PF00348: Polyprenyl synthetase GB:PROTEIN_ID BAC69362.1 LENGTH 376 SQ:AASEQ MTPDLHGTGPRTPRTATRGETVPTVPPAEKAADAVDVTALLERGRTLSTPVLRAAVDRLAPPMDTVAAYHFGWIDAAGNPADGDGGKAVRPALAVLSAQAAGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEILLELGTVEAGRATRRLTTASRALIDGQAQDISYEHRERVTVEECLEMEGNKTGALLACACSIGAVLGGADDRTADTLEKYGYHLGLAFQAVDDLLGIWGDPESTGKQTWSDLRQRKKSLPVVAALAAGGPASRRLGELLAEDAKSSDFENFSEEEFAARAALIEEAGGREWTAQEARRQHTIAIEALDTIEMPQQVRAQLVALADFVVVRKR GT:EXON 1|1-376:0| BL:SWS:NREP 1 BL:SWS:REP 47->375|GGPPS_MYCTU|5e-49|39.6|326/359| PROS 123->137|PS00723|POLYPRENYL_SYNTHET_1|PDOC00407| SEG 7->21|gtgprtprtatrget| SEG 75->88|daagnpadgdggka| SEG 92->116|alavlsaqaagaapevgvpgavave| SEG 173->186|agratrrlttasra| SEG 282->298|slpvvaalaaggpasrr| SEG 309->325|ssdfenfseeefaaraa| BL:PDB:NREP 1 BL:PDB:REP 117->281|1wy0A|2e-29|38.2|165/327| RP:PDB:NREP 1 RP:PDB:REP 117->372|3b7lA|1e-34|18.3|246/343| RP:PFM:NREP 1 RP:PFM:REP 117->280|PF00348|6e-24|43.6|163/246|polyprenyl_synt| HM:PFM:NREP 1 HM:PFM:REP 84->315|PF00348|5.5e-57|41.2|228/260|polyprenyl_synt| GO:PFM:NREP 1 GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF00348|IPR000092| RP:SCP:NREP 1 RP:SCP:REP 117->354|2q80A1|1e-34|22.6|217/285|a.128.1.1| HM:SCP:REP 49->376|1ubyA_|6.6e-76|37.7|313/0|a.128.1.1|1/1|Terpenoid synthases| OP:NHOMO 1680 OP:NHOMOORG 1005 OP:PATTERN 1111-111111111111211111221111211111111111111111112222111111111121-22 222-411222222223333-32118133333434442211222211-2-2211111111112224385362-------1-11221222111222111--12222212211--------------122222222222222221111232232211122222222222211122222212222221-11111-32222222222122222222222222222222223333332222222222222222222222211111112-2332211121--2333222111111111111111111-1111-11111--112111222211112-11111111121111111112112112144222222231121-111211--121221123222212222211111112111-111111121111111111111111112221222222221111111112111212222111222221111111111111111122211112222232222222111111211222112221222111222111111111221-1111111121221222112122222211121112222222221--1-11122222-2222221111111111112-222221221222112222121222122121111-11221------22112222222222222-2222222222222222222222122222222222222222222122222222112221222211111112222222221122122211212222222222222222223211112122122221112222221222122222222222222221111111122222221221122----------1---------------------------1---1---2-2 ----11--211----11111111111111111111111--111111--11111-111111111-----------------------------1--1---1----1---1-2111112-1--11-1--11261-2211-1-1-111-11-111-2-111211111131121-11113333j33312636D14412---13 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 260 STR:RPRED 69.1 SQ:SECSTR ####################################################################################################################HHHHHHHHHHHHHTTccEETTEEcGGGcTTTGGGHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHcccTTcccHHHHHHHHHHHTHHHHTHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccTTTTTcccHHHHHHHHHccHHHHHHHHHHTTcHTHHHHTcccHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHcTTTccTHHHHHHHHHHHTccc DISOP:02AL 1-36| PSIPRED ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc //