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Streptomyces avermitilis MA-4680 (save0)
Gene : hopD
DDBJ      :hopD         squalene/phytoene synthase
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  273/915 : Eukaryota  27/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->292 2zcrA PDBj 1e-18 28.4 %
:RPS:PDB   30->273 2e8uA PDBj 3e-23 12.3 %
:RPS:SCOP  18->294 1ezfA  a.128.1.2 * 2e-45 21.2 %
:HMM:SCOP  17->302 1ezfA_ a.128.1.2 * 6.6e-76 39.4 %
:RPS:PFM   30->273 PF00494 * SQS_PSY 1e-30 40.9 %
:HMM:PFM   28->289 PF00494 * SQS_PSY 1.8e-72 42.4 257/267  
:BLT:SWISS 18->288 CRTB_MYCTU 2e-56 48.1 %
:PROS 141->156|PS01044|SQUALEN_PHYTOEN_SYN_1
:PROS 176->201|PS01045|SQUALEN_PHYTOEN_SYN_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69364.1 GT:GENE hopD GT:PRODUCT squalene/phytoene synthase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(2024997..2025947) GB:FROM 2024997 GB:TO 2025947 GB:DIRECTION - GB:GENE hopD GB:PRODUCT squalene/phytoene synthase GB:NOTE squalene/hopene gene cluster, sqs1, PF00494: Squalene/phytoene synthase GB:PROTEIN_ID BAC69364.1 LENGTH 316 SQ:AASEQ MIRTVESEQHVSAPVLAAYSYCETVTGQQARNFAYGIRLLPTPKRRAMSAVYAFSRRVDDIGDGALAPDVKAARLEDTRALLSRVRDGRVDEDDTDPVAVALAHAAEQFPIPLGGLDELIDGVLMDVRGETYETWDDLKVYCRCVAGAIGRVSLGVFGTEPGARGAERASEYADTLGLALQLTNILRDVREDAEGGRTYLPADDLAKFGCSAGFDRPIPPEGSDFAGLVHFEVRRARALFAEGYRLLPMLDRRSGACVAAMAGIYRRLLDRIEREPEAVLRGRVSLPGREKAYVAVRGLSGLDARHVSRRTVRRRV GT:EXON 1|1-316:0| BL:SWS:NREP 1 BL:SWS:REP 18->288|CRTB_MYCTU|2e-56|48.1|260/302| PROS 141->156|PS01044|SQUALEN_PHYTOEN_SYN_1|PDOC00802| PROS 176->201|PS01045|SQUALEN_PHYTOEN_SYN_2|PDOC00802| SEG 305->315|rhvsrrtvrrr| BL:PDB:NREP 1 BL:PDB:REP 19->292|2zcrA|1e-18|28.4|261/281| RP:PDB:NREP 1 RP:PDB:REP 30->273|2e8uA|3e-23|12.3|235/288| RP:PFM:NREP 1 RP:PFM:REP 30->273|PF00494|1e-30|40.9|237/257|SQS_PSY| HM:PFM:NREP 1 HM:PFM:REP 28->289|PF00494|1.8e-72|42.4|257/267|SQS_PSY| GO:PFM:NREP 2 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00494|IPR002060| GO:PFM GO:0016740|"GO:transferase activity"|PF00494|IPR002060| RP:SCP:NREP 1 RP:SCP:REP 18->294|1ezfA|2e-45|21.2|274/323|a.128.1.2| HM:SCP:REP 17->302|1ezfA_|6.6e-76|39.4|282/0|a.128.1.2|1/1|Terpenoid synthases| OP:NHOMO 487 OP:NHOMOORG 313 OP:PATTERN -------1----111---------111111-1--1-----------1--------------------- 22212----------1111-11--1-1111111111111123331---1-----------11--1353351---------1-1-------------------1111111----------------1111111111111111---11111111111111111111111111111111111111111111--131--------------------1--------111---------111-11111111111--1------------11-------111-------------------------------------------------------------------------------------------------1-21--------2323222223332----------1-32222233----------1-----11----1-11111--2222222222212123------------------------------11--2222222222321222222322222122231222--111222221221212222222222232222--12221-------------------------1-11--------------------------------------------------------------1122-------1-----------------------------------------1-------------------------------------------------------------------------------------------------1----------------------1--------------------2-----------------1-----------------------------------2-1 -----------------11----------------1-----------------1-------------------------------------------------11-----------------------------------------------------1----------------1112I22211336611111----2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 92.1 SQ:SECSTR ##HHHTccccccHHHHHHHHHHHTccccTHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHTTccEETTEEcHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHHHHHHTHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHTTcTcccccccccHHHHHHHHHc####################### DISOP:02AL 1-17, 315-316| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc //