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Streptomyces avermitilis MA-4680 (save0)
Gene : ku2
DDBJ      :ku2          putative Ku70/Ku80 protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  216/915 : Eukaryota  1/199 : Viruses  2/175   --->[See Alignment]
b.131.1
:319 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  3->260 1jeqB1  b.131.1.2 * 4e-38 15.5 %
:HMM:SCOP  1->262 1jeyB1 b.131.1.2 * 4.1e-56 31.8 %
:RPS:PFM   11->158 PF02735 * Ku 1e-15 37.4 %
:HMM:PFM   10->189 PF02735 * Ku 1.7e-38 29.0 176/201  
:HMM:PFM   254->314 PF07382 * HC2 1.2e-05 41.0 61/194  
:BLT:SWISS 54->142 KU80_CHAGB 6e-05 30.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68589.1 GT:GENE ku2 GT:PRODUCT putative Ku70/Ku80 protein GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1052915..1053874) GB:FROM 1052915 GB:TO 1053874 GB:DIRECTION - GB:GENE ku2 GB:PRODUCT putative Ku70/Ku80 protein GB:NOTE probably involving non-homologous end-joining, PF02735: Ku70/Ku80 beta-barrel domain GB:PROTEIN_ID BAC68589.1 LENGTH 319 SQ:AASEQ MPRTIWSGAISFGLVTVPIHVVSATEDHSVRFHQYHLEDMGRVRVRKYCELEDREVTQDEIGKGYELSKDTVIPVLDEELRELPLPTAKAIEIEAFVPLASIDPMGIGEGYYLQPDGQVAAKPYKLLRQALERSSKVAVAKYAWSGRERLGMLRVREEAIVLHAMRWPDEIRDPSELAPQGIELSEDEITEAEQLIDRLTRDDLEGEEFQDHYTEALHEVIEAKQEGHAPPEARETEEEPGKVLDLMAALRQSVAKAKASRGESGEADVHELPRKKTAARKTAKQQPAKKTSAKRTAAKEPTKKTAAKKTTPKKPRRSA GT:EXON 1|1-319:0| BL:SWS:NREP 1 BL:SWS:REP 54->142|KU80_CHAGB|6e-05|30.7|88/736| SEG 229->240|appeareteeep| SEG 273->317|prkktaarktakqqpakktsakrtaakeptkktaakkttpkkprr| RP:PFM:NREP 1 RP:PFM:REP 11->158|PF02735|1e-15|37.4|147/196|Ku| HM:PFM:NREP 2 HM:PFM:REP 10->189|PF02735|1.7e-38|29.0|176/201|Ku| HM:PFM:REP 254->314|PF07382|1.2e-05|41.0|61/194|HC2| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF02735|IPR006164| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF02735|IPR006164| GO:PFM GO:0006303|"GO:double-strand break repair via nonhomologous end joining"|PF02735|IPR006164| RP:SCP:NREP 1 RP:SCP:REP 3->260|1jeqB1|4e-38|15.5|251/298|b.131.1.2| HM:SCP:REP 1->262|1jeyB1|4.1e-56|31.8|261/304|b.131.1.2|1/1|SPOC domain-like| OP:NHOMO 292 OP:NHOMOORG 220 OP:PATTERN -----------------------1-------------------------------------------- 112-2---------11111-11--1111111111111111-1111111-111111-----111-113242----------1------------------1-1-1-111-1---------------------------------------------------------------------------------1-111111111-11111111111111----11--------11---------------------------------------------------------------------------------------------------------1-------1----1--1111-111111111--------1--1-----2142341122222----------2---------241--3324644643412------2222------------11-----------------------------------111---11-1111-111----11121111---21221---11---111111-1----1--1-----------1-1-1--------------111---2--1121-1---------------------------------------------------------------------------------------------------------------------------------------------------------------11111------------------------------------11111-11111111111------------------------1111111----------------------------------------------------------------1- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- -----------------------------------------------------------------------------------------------1------1------------------------------------------------------------------------ DISOP:02AL 181-182, 185-186, 223-241, 250-319| PSIPRED cccccEEEEEEEEEEEEEEEEEEcccccccccEEccHHHcccccEEEEcccccccccHHHcEEcEEEccccEEEEcHHHHHHcccccccEEEEEEEccHHHcccEEEcccEEEEEccccHHHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEccEEEEEEcccHHHccccHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //