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Streptomyces avermitilis MA-4680 (save0)
Gene : litR
DDBJ      :litR         putative MerR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.6.1c.23.6
:347 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->63 2jmlA PDBj 2e-04 42.4 %
:RPS:PDB   23->93 3d6yA PDBj 2e-14 19.7 %
:RPS:SCOP  26->90 1j9iA  a.6.1.5 * 2e-12 12.3 %
:HMM:SCOP  26->152 1q06A_ a.6.1.3 * 1.4e-12 22.0 %
:HMM:SCOP  212->274 1bmtA2 c.23.6.1 * 3.2e-06 25.4 %
:HMM:PFM   220->312 PF02310 * B12-binding 2.6e-10 34.1 88/121  
:HMM:PFM   27->63 PF00376 * MerR 7.3e-10 43.2 37/38  
:BLT:SWISS 29->84 YCGE_ECOLI 2e-09 42.9 %
:BLT:SWISS 209->345 MEND_RENSM 8e-04 33.8 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68924.1 GT:GENE litR GT:PRODUCT putative MerR-family transcriptional regulator GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1506484..1507527) GB:FROM 1506484 GB:TO 1507527 GB:DIRECTION - GB:GENE litR GB:PRODUCT putative MerR-family transcriptional regulator GB:NOTE probably repressor/activator for carotenoid biosynthesis, PF00376: MerR family regulatory protein GB:PROTEIN_ID BAC68924.1 LENGTH 347 SQ:AASEQ MSESTRAEGRPGGLRPGTAAVDDTGLTTGALARRLGVSPTTLRSWDRRYGVGPQIRADGRHRRWSPQDVAMLETMCRLTSAGVPPAEAARVAKEGGGSSSPTPAQPEAAGAPAVRVRSHAGGTLPLGDVRQECRGLARAAVRLDAPAVEDQLTSSVERHGLTVAWAEVMVPTLHAVGRKWESSGDRYVEVEHLLSWHISTALRRVLAPVRPGDRDAAGPVVLACVPGEQHTLPLEALNAGLIELGLPTRMFGAAVPVEALTAAVRRLGPAAVVLWAQARSTASLPLARHVAATQWGVKGARRHPLVMLGGQGWAGRSAQGMLRPPGLREALDALAATYEGAASGPRG GT:EXON 1|1-347:0| BL:SWS:NREP 2 BL:SWS:REP 29->84|YCGE_ECOLI|2e-09|42.9|56/243| BL:SWS:REP 209->345|MEND_RENSM|8e-04|33.8|130/100| BL:PDB:NREP 1 BL:PDB:REP 31->63|2jmlA|2e-04|42.4|33/81| RP:PDB:NREP 1 RP:PDB:REP 23->93|3d6yA|2e-14|19.7|71/277| HM:PFM:NREP 2 HM:PFM:REP 220->312|PF02310|2.6e-10|34.1|88/121|B12-binding| HM:PFM:REP 27->63|PF00376|7.3e-10|43.2|37/38|MerR| RP:SCP:NREP 1 RP:SCP:REP 26->90|1j9iA|2e-12|12.3|65/68|a.6.1.5| HM:SCP:REP 26->152|1q06A_|1.4e-12|22.0|127/127|a.6.1.3|1/1|Putative DNA-binding domain| HM:SCP:REP 212->274|1bmtA2|3.2e-06|25.4|63/156|c.23.6.1|1/1|Cobalamin (vitamin B12)-binding domain| OP:NHOMO 28 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-1-----11--1-----------11--2-1111------------------------------------------------------------------11111---1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------1------------------1----------------------------11---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11--11----------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 72 STR:RPRED 20.7 SQ:SECSTR #####################TcccEEHHHHHHHHTccHHHHHHHHHTTcccccEcTTTccEEEcGGGGGHHHHHHHHHHTTccHHHHHHHTT############################################################################################################################################################################################################################################################## DISOP:02AL 1-19, 92-112, 205-219, 343-347| PSIPRED cccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccccEEEEHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHcccccc //