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Streptomyces avermitilis MA-4680 (save0)
Gene : litS
DDBJ      :litS         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  114/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:204 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->185 2q1zA PDBj 8e-11 25.3 %
:RPS:PDB   20->186 3dxjF PDBj 7e-14 9.6 %
:RPS:SCOP  20->104 1iw7F3  a.177.1.1 * 3e-11 15.3 %
:RPS:SCOP  140->186 1k78A1  a.4.1.5 * 5e-06 17.0 %
:HMM:SCOP  19->133 1or7A2 a.177.1.1 * 7.1e-20 32.7 %
:HMM:SCOP  130->200 1rp3A2 a.4.13.2 * 2.4e-13 36.6 %
:RPS:PFM   48->104 PF04542 * Sigma70_r2 2e-09 45.6 %
:HMM:PFM   46->114 PF04542 * Sigma70_r2 2.5e-19 43.5 69/71  
:HMM:PFM   143->194 PF08281 * Sigma70_r4_2 2.2e-16 36.5 52/54  
:BLT:SWISS 38->185 SIGK_MYCTU 3e-11 26.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68925.1 GT:GENE litS GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1507710..1508324 GB:FROM 1507710 GB:TO 1508324 GB:DIRECTION + GB:GENE litS GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE probably sigma factor for transcription of carotenoid biosynthesis, PF04542: Sigma-70 region 2 putative RNA polymerase ECF-subfamily sigma factor (sig17) GB:PROTEIN_ID BAC68925.1 LENGTH 204 SQ:AASEQ MTAQPTTAHARATDVPLWVPVEESLADEELARGLMNGDEACLTAAYHRWSALVHTLARRTLGDVREAEDVTQQVFLGVWRGRAAYRPERGALGGWIVGITRRKIADALAARTRRRDLVTSAGSVMLLADGAGELPEAALDRVLVRHELAKLPAPQQQVLRLAFFEDLTQTQIARRTGWPLGTVKSHARRGLRQLRRCLQQEATA GT:EXON 1|1-204:0| BL:SWS:NREP 1 BL:SWS:REP 38->185|SIGK_MYCTU|3e-11|26.4|148/187| SEG 105->117|adalaartrrrdl| SEG 188->200|rrglrqlrrclqq| BL:PDB:NREP 1 BL:PDB:REP 18->185|2q1zA|8e-11|25.3|158/176| RP:PDB:NREP 1 RP:PDB:REP 20->186|3dxjF|7e-14|9.6|167/349| RP:PFM:NREP 1 RP:PFM:REP 48->104|PF04542|2e-09|45.6|57/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 46->114|PF04542|2.5e-19|43.5|69/71|Sigma70_r2| HM:PFM:REP 143->194|PF08281|2.2e-16|36.5|52/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 20->104|1iw7F3|3e-11|15.3|85/184|a.177.1.1| RP:SCP:REP 140->186|1k78A1|5e-06|17.0|47/63|a.4.1.5| HM:SCP:REP 19->133|1or7A2|7.1e-20|32.7|113/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 130->200|1rp3A2|2.4e-13|36.6|71/0|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 145 OP:NHOMOORG 114 OP:PATTERN -------------------------------------------------------------------- 22212------------11-1-----11111--1112-1111-111------232--1---11-1--23-------------1------------------1---2------------------------------22231---232--1---2111-------1-3-1--------------1-------1---------------------1--------111-------1--------------------------------------------------------------------------------------------------------------------------------------------2---11----------111-11121----------------------1-------------12-11-------1-1--------1------1------------------------------1---------------2--------------11-1-11--22--11----1-----1-----------------------------------------------1------------------------------111--1---------------------------1--1-------------------------------------------------------------------------------------------------------------------------------------------11-1------11-------------------------111111111-------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 169 STR:RPRED 82.8 SQ:SECSTR #################HHHHHTccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTcccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTc################## DISOP:02AL 1-23, 200-204| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccc //