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Streptomyces avermitilis MA-4680 (save0)
Gene : phrB
DDBJ      :phrB         putative deoxyribodipyrimidine photolyase
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  472/915 : Eukaryota  139/199 : Viruses  0/175   --->[See Alignment]
a.99.1c.28.1
:457 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->442 1dnpA PDBj 5e-55 34.0 %
:RPS:PDB   4->454 1dnpA PDBj 2e-82 30.6 %
:RPS:SCOP  4->174 1u3cA2  c.28.1.1 * 8e-16 19.5 %
:RPS:SCOP  204->453 1u3cA1  a.99.1.1 * 1e-77 33.7 %
:HMM:SCOP  2->200 1owlA2 c.28.1.1 * 8.6e-39 31.8 %
:HMM:SCOP  189->454 1np7A1 a.99.1.1 * 1.8e-93 47.2 %
:RPS:PFM   5->152 PF00875 * DNA_photolyase 2e-09 30.6 %
:RPS:PFM   206->442 PF03441 * FAD_binding_7 8e-52 50.0 %
:HMM:PFM   198->445 PF03441 * FAD_binding_7 8.5e-94 50.0 246/277  
:HMM:PFM   4->162 PF00875 * DNA_photolyase 5.2e-40 30.8 156/166  
:BLT:SWISS 1->443 PHR_STRGR e-147 61.8 %
:PROS 312->324|PS00394|DNA_PHOTOLYASES_1_1
:PROS 332->351|PS00691|DNA_PHOTOLYASES_1_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68922.1 GT:GENE phrB GT:PRODUCT putative deoxyribodipyrimidine photolyase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1503492..1504865 GB:FROM 1503492 GB:TO 1504865 GB:DIRECTION + GB:GENE phrB GB:PRODUCT putative deoxyribodipyrimidine photolyase GB:NOTE PF03441: FAD binding domain of DNA photolyase GB:PROTEIN_ID BAC68922.1 LENGTH 457 SQ:AASEQ MNVSVVLFTSDLRLHDHPPLRAALDGARQVVPLFVRDRAVDGAGFAAPNRLAFLADCLRDLDAGLRERGGRLVLRSGDVVDQVCKVAAEADADEVHLAAGVSAYAHRREQRLRSALEADGRRLHVHETVITAVAPGAVTPSSSDHFAVFTPYFRHWEREHLRDALGAPRGVRVPESVGSERLPTRTELSGLSQGLAAGGEEEGRKRLMAWLRGGITAYEDRHDDLAGDATSHLSPHLHFGTLSPVELVHRARRTGGPGAEAFVRQLAWRDFHYQVLAARPDAATADYRGRGDRWRSEAAAREEVEAWRTGRTGYPVIDAAMRQLRHEGWMHNRGRLLTASFLTKTLYVDWRVGARHFLELLVDGDVANNQLNWQWMAGTGTDTRPNRVLNPVTQAKRYDPDGAYVRRWVPELEGLRGAAVHEPWKLKGLDRAAYDYPDPIVELADGLARFRHARGRD GT:EXON 1|1-457:0| BL:SWS:NREP 1 BL:SWS:REP 1->443|PHR_STRGR|e-147|61.8|440/455| PROS 312->324|PS00394|DNA_PHOTOLYASES_1_1|PDOC00331| PROS 332->351|PS00691|DNA_PHOTOLYASES_1_2|PDOC00331| SEG 64->77|glrerggrlvlrsg| SEG 187->203|elsglsqglaaggeeeg| SEG 293->308|rwrseaaareeveawr| BL:PDB:NREP 1 BL:PDB:REP 5->442|1dnpA|5e-55|34.0|427/469| RP:PDB:NREP 1 RP:PDB:REP 4->454|1dnpA|2e-82|30.6|448/469| RP:PFM:NREP 2 RP:PFM:REP 5->152|PF00875|2e-09|30.6|147/168|DNA_photolyase| RP:PFM:REP 206->442|PF03441|8e-52|50.0|232/252|FAD_binding_7| HM:PFM:NREP 2 HM:PFM:REP 198->445|PF03441|8.5e-94|50.0|246/277|FAD_binding_7| HM:PFM:REP 4->162|PF00875|5.2e-40|30.8|156/166|DNA_photolyase| GO:PFM:NREP 4 GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF00875|IPR006050| GO:PFM GO:0006281|"GO:DNA repair"|PF00875|IPR006050| GO:PFM GO:0003913|"GO:DNA photolyase activity"|PF03441|IPR005101| GO:PFM GO:0006281|"GO:DNA repair"|PF03441|IPR005101| RP:SCP:NREP 2 RP:SCP:REP 4->174|1u3cA2|8e-16|19.5|169/185|c.28.1.1| RP:SCP:REP 204->453|1u3cA1|1e-77|33.7|249/300|a.99.1.1| HM:SCP:REP 2->200|1owlA2|8.6e-39|31.8|198/0|c.28.1.1|1/1|Cryptochrome/photolyase, N-terminal domain| HM:SCP:REP 189->454|1np7A1|1.8e-93|47.2|265/279|a.99.1.1|1/1|Cryptochrome/photolyase FAD-binding domain| OP:NHOMO 1040 OP:NHOMOORG 631 OP:PATTERN ------1111111111--------32233223-----------------1-----------1------ ---11-11111----11----1--11-----11111111111-12----1211111-1----1-1-11211-------------------------1----132212132--------------1---1-----1122322---1112212222222333333222322321--2122-22-2---111---1-1111111--111111----1-11------221111111--11111111111111-111-1-------------------11-------1-----------------1111111111111-------------------------------------------------------------11111-------1121--111111----------1----------111-111-1-111--1112133-2122221111111113111--21--------1--1--11-------------221-112----11111111111221111111111111111111-3111111-11-111-1221111-1111----111-------------------------------1-------------------11-----111231123231111112-111111--1-1----111-1-111-1111111111111111-111111111111111111111111--111111111111111111111111111111111111111--1111-111111-1212---------------11111-111111111111111111111112111-22-11111-33333322111111111111------1---------------------------1---------------1-1--------1- ------2-422----44431112-211------111----------22333333333--222-11-11----1--111112--------111411----3224111--A26B766932-21-21332214D21223212-21232222222112283461---24413341--846444O4234545764555633434 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 457 STR:RPRED 100.0 SQ:SECSTR cEEEEEEcccccccTTcHHHHHHcccTTEEEEEEEEcHHHHHHTTccHHHHHHHHHHHHHHHHHHHHTTccEEEEEccHHHHHHHHHHHHTccEEEEEccccHHHHHHHHHHHHHcTTcEEEEEccccccccccTTccccTTccccccHHHHHHHHHHHHHTccccccccccccTTccccccccccccccccTTTccccHHHHHHHHHHHHHTHHHHHHHHTTcTTcccccccHHHHHHTcccHHHHHHHHGGGGTcTTHHHHHHHHHHHHHHHHHHHcGGGGGTccccGGGGGccccccHHHHHHHHHTccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHTccccHHHHHHHHHTTcTTccHHHHHHHHHHHTTccTTcccTccccHHHHHHHHTTTcHHHHHHcGGGTTccTTGGGcHHHHHHTTTcccccccccccHHHHHHHHHHHTcHT DISOP:02AL 453-457| PSIPRED cccEEEEEcccccccccHHHHHHHHccccEEEEEEEcHHHcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEccEEEEcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHccccHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHEEccccccccccccccHHHHccccccccHHHHHHHHHHHcccHHHccccccccHHHHHcccccHHHHHHHHHHHHHHHHHccc //