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Streptomyces avermitilis MA-4680 (save0)
Gene : rho2
DDBJ      :rho2         putative transcription termination factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  778/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.37.1
:379 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   20->373 1pvoB PDBj 2e-88 54.3 %
:RPS:PDB   26->369 2ck3D PDBj 1e-53 21.2 %
:RPS:SCOP  17->84 1a62A2  b.40.4.5 * 2e-10 42.6 %
:RPS:SCOP  74->322 1bmfD3  c.37.1.11 * 3e-43 24.1 %
:HMM:SCOP  15->84 1a62A2 b.40.4.5 * 1.6e-15 50.0 %
:HMM:SCOP  54->328 1e79A3 c.37.1.11 * 3.5e-66 35.4 %
:RPS:PFM   20->85 PF07497 * Rho_RNA_bind 8e-10 51.5 %
:RPS:PFM   116->315 PF00006 * ATP-synt_ab 1e-09 28.4 %
:HMM:PFM   115->320 PF00006 * ATP-synt_ab 4.8e-40 24.9 201/215  
:HMM:PFM   18->83 PF07497 * Rho_RNA_bind 7.3e-12 45.5 66/78  
:BLT:SWISS 20->377 RHO_STRLI e-113 59.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC69020.1 GT:GENE rho2 GT:PRODUCT putative transcription termination factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1619721..1620860 GB:FROM 1619721 GB:TO 1620860 GB:DIRECTION + GB:GENE rho2 GB:PRODUCT putative transcription termination factor GB:NOTE PF00006: ATP synthase alpha/beta family, nucleotide-binding domain GB:PROTEIN_ID BAC69020.1 LENGTH 379 SQ:AASEQ MTTTLEHPPVQQQLPAHATGVLDIAQGGQGYLRTGNCLPTPNDLQVPAALIRRHGLRKGDVVEGVRGGQRGLTEVASVNGRAPEQLRGRPHFRDLTPLHPRERIRLEHPAGGLSTRVIDLIAPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPECHLMVVLLDERPEEVTDMRRSVRGEVYASTFDRAPKQHIALAELVVERAKRLVEQGQDVVILLDSLTRLCRAHNNTAAAGGRTLSGGVDAAALQGPKRFFGAARLAEEGGSLTILATALVETGSRADDFFFEELKSTGNMELRLDRAPAAKRIYPAVDITPSGTRREELLLPSAELAAVRGLRRALQTRDGQANLETLLERLRATPDNTAFLRQVQPTLPAA GT:EXON 1|1-379:0| BL:SWS:NREP 1 BL:SWS:REP 20->377|RHO_STRLI|e-113|59.4|357/707| SEG 324->335|eelllpsaelaa| BL:PDB:NREP 1 BL:PDB:REP 20->373|1pvoB|2e-88|54.3|348/358| RP:PDB:NREP 1 RP:PDB:REP 26->369|2ck3D|1e-53|21.2|340/467| RP:PFM:NREP 2 RP:PFM:REP 20->85|PF07497|8e-10|51.5|66/75|Rho_RNA_bind| RP:PFM:REP 116->315|PF00006|1e-09|28.4|194/212|ATP-synt_ab| HM:PFM:NREP 2 HM:PFM:REP 115->320|PF00006|4.8e-40|24.9|201/215|ATP-synt_ab| HM:PFM:REP 18->83|PF07497|7.3e-12|45.5|66/78|Rho_RNA_bind| GO:PFM:NREP 4 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 2 RP:SCP:REP 17->84|1a62A2|2e-10|42.6|68/78|b.40.4.5| RP:SCP:REP 74->322|1bmfD3|3e-43|24.1|245/276|c.37.1.11| HM:SCP:REP 15->84|1a62A2|1.6e-15|50.0|70/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 54->328|1e79A3|3.5e-66|35.4|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1316 OP:NHOMOORG 781 OP:PATTERN -------------------------------------------------------------------- 1121211111111111111-111111111111111111112111211121121211111111212112221111111111111212221111111111111111111131222222222222222111111111112221111-12-------------------------------------11111111212111111111111111212212111222112211111121111111111111111111111----------11-----11--------------------------------------------------212212222222121211121111221111111--221222222222211323211211111223111112311311111111111-33233133232122223342222211122122232212111111111111111212222222211111111111111111111111112112221433353222213332333413223322211223222221112212223211421111111112122223122122123333222222222333331211111111111111111111111121111312222222114232423222322333321-1222211111132133232442222222-43223322224241221121113343233343333443434432122322351455555445454112111111222211523111111111111111111-1111112133232222322222333111111111221132222234211222222222211-111221111112221221122--------------------------2121122222132 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-7, 377-379| PSIPRED ccccccccccccccEEEccEEEEEEEcccEEEEccccccccccEEEccccccccccccccEEccccccHHHccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHcEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccEEEEEEEEEEcccccccHHHHHHHEEEEEEEEEEHHHHHccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccc //