[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : rnhA
DDBJ      :rnhA         putative ribonuclease H
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  582/915 : Eukaryota  111/199 : Viruses  3/175   --->[See Alignment]
c.55.3
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->145 2yv0X PDBj 1e-19 36.7 %
:RPS:PDB   7->142 3d0pA PDBj 2e-22 21.1 %
:RPS:SCOP  7->150 1f21A  c.55.3.1 * 3e-35 33.6 %
:HMM:SCOP  6->149 1rilA_ c.55.3.1 * 2.3e-41 44.3 %
:RPS:PFM   14->147 PF00075 * RnaseH 5e-14 41.7 %
:HMM:PFM   8->149 PF00075 * RnaseH 9.4e-26 31.5 127/131  
:HMM:PFM   134->195 PF05053 * Menin 0.00033 25.8 62/618  
:BLT:SWISS 5->143,202->232 RNH_STRCO 1e-71 87.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68848.1 GT:GENE rnhA GT:PRODUCT putative ribonuclease H GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1426227..1426937) GB:FROM 1426227 GB:TO 1426937 GB:DIRECTION - GB:GENE rnhA GB:PRODUCT putative ribonuclease H GB:NOTE PF00075: RNase H GB:PROTEIN_ID BAC68848.1 LENGTH 236 SQ:AASEQ MIGGMSERVVAACDGASKGNPGPAGWAWVVADGEETPTRWAAGALGTATNNVAELTALERLLSAMDPDVPLEIRMDSQYAMKAVTTWLPGWKRKGWKTAAGKPVANQELVARIDELLDGRSVEFRYVPAHQVDGDRLNDFADRAASQAAIVQEPAGSEYGSPEPPKSPDTVAAGSAGRGAPAKKRASARTAKTSTRTIKAKFPGRCVCGRPYAAGEPIAKNAQGWGHPECRTADDV GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 5->143,202->232|RNH_STRCO|1e-71|87.8|170/231| SEG 182->201|akkrasartaktstrtikak| BL:PDB:NREP 1 BL:PDB:REP 5->145|2yv0X|1e-19|36.7|139/155| RP:PDB:NREP 1 RP:PDB:REP 7->142|3d0pA|2e-22|21.1|128/134| RP:PFM:NREP 1 RP:PFM:REP 14->147|PF00075|5e-14|41.7|120/132|RnaseH| HM:PFM:NREP 2 HM:PFM:REP 8->149|PF00075|9.4e-26|31.5|127/131|RnaseH| HM:PFM:REP 134->195|PF05053|0.00033|25.8|62/618|Menin| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00075|IPR002156| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF00075|IPR002156| RP:SCP:NREP 1 RP:SCP:REP 7->150|1f21A|3e-35|33.6|140/152|c.55.3.1| HM:SCP:REP 6->149|1rilA_|2.3e-41|44.3|140/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 768 OP:NHOMOORG 696 OP:PATTERN -------------------------------------------------------------------- --112-------1--------2---1------11111122-21-111111111111-111--211-2111111111-11111--1111-----------1-----1--2----------------11111111-11111-1---1-1111-----11111111--11----11111--1111121111---1---------------------------------------11----------------------11--1----1111----1--------------------------------------------------1--------------1-------1-1--1--11--11-111-11111-----1111111111111112121111111111111111-2112111111111--11111111222111111111111111111111111111111111111111--11-11111111111112111111111111111111111111111111111211111111111111111111111111111111111111111211-1-11111111111111111111111111-11111------11111-111-11-1-2111111--111111111222111121221221-11111-1----11111111111111111-1111111111111111111111111111111111111121111111111111-111111111111111111111111111111111111111-1-111111111111-1111111111111111111111111111-12121111113211111111111111111111--------------11--------------------------------------- ------------111-121122111111111-11--11-21121-1111211-21-1111113-1----1--211------111-1-1--21111111--1-1-------13311--111111-11-11151-12-1---1-11--1---1-11-111212-131-121-A1212-------------1-----2-1-- ---------------------1------------------------------------------------------------------------------------------------------------------------------------------1---------1---- STR:NPRED 154 STR:RPRED 65.3 SQ:SECSTR ##cccTccccEEEEEEEccccEEEEEEEEETTTcEEcEEEEEEEEEEEcHHHHHHHHHHHHHHHHHTTccccEEEccHHHHHHHHTHHHHTcccccccccGGGHHHHHHHHHHHHHHHHccccccEEEccHccHHHcccTTcHHHHHHHTccccTT################################################################################ DISOP:02AL 1-4, 149-195, 219-236| PSIPRED cccccccEEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccccccc //