[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : sig1
DDBJ      :sig1         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.13a.4.6d.113.1
:190 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   29->181 3dxjF PDBj 2e-07 11.8 %
:RPS:SCOP  4->109 1iryA  d.113.1.1 * 5e-05 11.8 %
:RPS:SCOP  123->181 1yioA1  a.4.6.2 * 4e-08 15.3 %
:HMM:SCOP  114->182 1rp3A2 a.4.13.2 * 3.7e-09 29.0 %
:RPS:PFM   127->177 PF08281 * Sigma70_r4_2 1e-04 35.3 %
:HMM:PFM   126->177 PF08281 * Sigma70_r4_2 4.6e-16 32.7 52/54  
:HMM:PFM   43->94 PF04542 * Sigma70_r2 0.00088 19.2 52/71  
:BLT:SWISS 31->170 RPOE_STRCO 2e-07 30.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67735.1 GT:GENE sig1 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(32552..33124) GB:FROM 32552 GB:TO 33124 GB:DIRECTION - GB:GENE sig1 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF08281: Sigma-70, region 4 GB:PROTEIN_ID BAC67735.1 LENGTH 190 SQ:AASEQ MMSETPAQAGRREPLPETRPVPSTELVRRDDFSVFYRTEKKRLIAFLIYAGARVWEADDLAHEVLSQLLPDRWKTLEYPRAYMRKSAIRAYLRQNERTREIPTDELPDLPGGIDPVTCVELSEQTNAIIDAIQQLPPTQRTVMAFVMSDSDTAEIAEALNMAPGAVNTNICRARARLKTTLGLMKGDNNA GT:EXON 1|1-190:0| BL:SWS:NREP 1 BL:SWS:REP 31->170|RPOE_STRCO|2e-07|30.4|135/177| RP:PDB:NREP 1 RP:PDB:REP 29->181|3dxjF|2e-07|11.8|152/349| RP:PFM:NREP 1 RP:PFM:REP 127->177|PF08281|1e-04|35.3|51/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 126->177|PF08281|4.6e-16|32.7|52/54|Sigma70_r4_2| HM:PFM:REP 43->94|PF04542|0.00088|19.2|52/71|Sigma70_r2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 4->109|1iryA|5e-05|11.8|102/156|d.113.1.1| RP:SCP:REP 123->181|1yioA1|4e-08|15.3|59/70|a.4.6.2| HM:SCP:REP 114->182|1rp3A2|3.7e-09|29.0|69/0|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 152 STR:RPRED 80.0 SQ:SECSTR ############################HHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHH#HHHHcccTTccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcTTccHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHH######### DISOP:02AL 1-26, 181-190| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccc //