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Streptomyces avermitilis MA-4680 (save0)
Gene : sig10
DDBJ      :sig10        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  29/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.177.1a.4.13
:204 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->104 2o7gB PDBj 4e-17 48.3 %
:BLT:PDB   149->177 2o8xA PDBj 1e-07 65.5 %
:RPS:PDB   30->177 3dxjF PDBj 8e-08 10.2 %
:RPS:SCOP  12->114 1z77A2  a.121.1.1 * 1e-10 8.7 %
:HMM:SCOP  15->127 1or7A2 a.177.1.1 * 4.9e-23 30.4 %
:HMM:SCOP  128->195 1or7A1 a.4.13.2 * 3.4e-12 44.1 %
:HMM:PFM   41->107 PF04542 * Sigma70_r2 1.7e-18 34.3 67/71  
:HMM:PFM   138->189 PF08281 * Sigma70_r4_2 4.3e-18 51.9 52/54  
:BLT:SWISS 17->177 RPSC_MYCTU 3e-26 41.1 %
:PROS 63->94|PS01063|SIGMA70_ECF
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68608.1 GT:GENE sig10 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1076865..1077479) GB:FROM 1076865 GB:TO 1077479 GB:DIRECTION - GB:GENE sig10 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE similar to SCO0866, PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68608.1 LENGTH 204 SQ:AASEQ MITSALPTSRAAYDRPASADESITAWALAARGGDPEAVERFVRALHRDVVRYVAHLSADPQAADDLAQDTFLRALGSLHRFEGRSSARAWLMSIARRAVVDSFRHAAARPRLSDIPDWQLAVELAQPCDLPGLDDGIALLDLLAVLPDERREAFVLTQLMGLPYAEAAEVSGCPIGTVRSRVARARATLIGLLTEADASAALAA GT:EXON 1|1-204:0| BL:SWS:NREP 1 BL:SWS:REP 17->177|RPSC_MYCTU|3e-26|41.1|158/185| PROS 63->94|PS01063|SIGMA70_ECF|PDOC00814| SEG 58->69|adpqaaddlaqd| SEG 129->148|dlpglddgialldllavlpd| SEG 178->187|vrsrvarara| SEG 196->203|adasaala| BL:PDB:NREP 2 BL:PDB:REP 17->104|2o7gB|4e-17|48.3|87/89| BL:PDB:REP 149->177|2o8xA|1e-07|65.5|29/61| RP:PDB:NREP 1 RP:PDB:REP 30->177|3dxjF|8e-08|10.2|147/349| HM:PFM:NREP 2 HM:PFM:REP 41->107|PF04542|1.7e-18|34.3|67/71|Sigma70_r2| HM:PFM:REP 138->189|PF08281|4.3e-18|51.9|52/54|Sigma70_r4_2| RP:SCP:NREP 1 RP:SCP:REP 12->114|1z77A2|1e-10|8.7|103/125|a.121.1.1| HM:SCP:REP 15->127|1or7A2|4.9e-23|30.4|112/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 128->195|1or7A1|3.4e-12|44.1|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 31 OP:NHOMOORG 29 OP:PATTERN -------------------------------------------------------------------- -----11111111111111-1-111-111111--------------------------------1-1221----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 160 STR:RPRED 78.4 SQ:SECSTR ################HHHHcHcHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHcccccccH#HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTHHHHHHHHTcccccTTcccTTcccccG########################### DISOP:02AL 1-21, 192-204| PSIPRED ccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccc //