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Streptomyces avermitilis MA-4680 (save0)
Gene : sig11
DDBJ      :sig11        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  153/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13d.17.4
:307 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   7->158 3dxjF PDBj 2e-11 9.3 %
:RPS:PDB   184->283 3dm8A PDBj 1e-06 9.0 %
:RPS:SCOP  7->90 1or7A2  a.177.1.1 * 2e-08 14.6 %
:RPS:SCOP  184->283 3dm8A1  d.17.4.20 * 3e-07 10.0 %
:HMM:SCOP  4->66 1h3lA_ a.177.1.1 * 6.3e-11 41.3 %
:HMM:SCOP  70->156 1iw7F2 a.4.13.2 * 1e-08 26.7 %
:HMM:SCOP  166->283 1qjgA_ d.17.4.3 * 2.6e-11 25.0 %
:RPS:PFM   8->69 PF04542 * Sigma70_r2 1e-05 37.1 %
:HMM:PFM   7->69 PF04542 * Sigma70_r2 3.4e-15 38.1 63/71  
:HMM:PFM   105->156 PF08281 * Sigma70_r4_2 2e-13 30.8 52/54  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68619.1 GT:GENE sig11 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1088612..1089535 GB:FROM 1088612 GB:TO 1089535 GB:DIRECTION + GB:GENE sig11 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68619.1 LENGTH 307 SQ:AASEQ MTRTEEFEELRPLLFSVAYRILGSVSEAEDAVQETWLRYELSPARPASARAFLSAVVTRVSIDVLRSARMRREEYVGPWFPEPLLTDPYEDPEQSAELADSLSMAALLLLERLSPLERAVFVLREVFAFGFPEIASAVGRSEAACRQLAVRARRHMDAGRPRFEADRKEREELAERFFEALREGNVDGLRELLAADVSLVGDGGGKAPQWARGFFGVGQVSQMLATLFPPFFRIGGVVDPHQVNGQPGALFRDRDGKVLNTWTLDILGGQIQAIRTVSNPDKLGHLGPVADAWAVLRETQQVRPDPE GT:EXON 1|1-307:0| SEG 95->117|saeladslsmaallllerlsple| SEG 169->183|ereelaerffealre| RP:PDB:NREP 2 RP:PDB:REP 7->158|3dxjF|2e-11|9.3|150/349| RP:PDB:REP 184->283|3dm8A|1e-06|9.0|100/135| RP:PFM:NREP 1 RP:PFM:REP 8->69|PF04542|1e-05|37.1|62/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 7->69|PF04542|3.4e-15|38.1|63/71|Sigma70_r2| HM:PFM:REP 105->156|PF08281|2e-13|30.8|52/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 7->90|1or7A2|2e-08|14.6|82/113|a.177.1.1| RP:SCP:REP 184->283|3dm8A1|3e-07|10.0|100/135|d.17.4.20| HM:SCP:REP 4->66|1h3lA_|6.3e-11|41.3|63/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 70->156|1iw7F2|1e-08|26.7|86/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 166->283|1qjgA_|2.6e-11|25.0|112/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 278 OP:NHOMOORG 155 OP:PATTERN -------------------------------------------------------------------- -11-C---------53322-23--3422222143338143132519-1------------422-1156D4------------1----------------------1---1----------------------------------1-1-------------------1---------------------------111111-1-111111-111--111-------------13--------------------------------------------------------------------------------------------------------------------------------------------1--1111-------1---111--1-----------1-121-12-1-11-1---111111111------11-11-1--------------1----------------------------------11--111-122221-11111132111111211-1-1--11----111-1-1-----------------------------------------------621322--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11---------------------------------------------------1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 82.7 SQ:SECSTR ######HHHTHHHHHHHHGGGccccccHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHH##HHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHH#########################cccHHHHHHEEEEEEEEEEccTTTcTTcEEEEcHHHHHHHHHHHHHHEEEEEEEEEEEEEcccEEEEETTTccEEEEEEEEEEETTEEEEEEEEEcHHHHHHHc#################### DISOP:02AL 157-171, 300-307| PSIPRED ccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEcHHHHHHcccccHHHHHHHHHHHcccccc //