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Streptomyces avermitilis MA-4680 (save0)
Gene : sig12
DDBJ      :sig12        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  137/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13g.51.1
:381 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   3->147 3dxjF PDBj 2e-05 8.3 %
:RPS:SCOP  3->58 1h3lA  a.177.1.1 * 2e-04 21.4 %
:RPS:SCOP  79->182 1adtA3  g.51.1.1 * 2e-13 14.0 %
:HMM:SCOP  3->67 1h3lA_ a.177.1.1 * 9.8e-12 32.3 %
:HMM:SCOP  88->149 1or7A1 a.4.13.2 * 1.6e-06 27.4 %
:HMM:PFM   5->69 PF04542 * Sigma70_r2 5.7e-12 30.8 65/71  
:HMM:PFM   98->148 PF08281 * Sigma70_r4_2 2.5e-10 27.5 51/54  
:HMM:PFM   239->262 PF01316 * Arg_repressor 0.0009 43.5 23/70  
:HMM:PFM   336->361 PF07719 * TPR_2 0.001 23.1 26/34  
:BLT:SWISS 6->310 Y370_RHIME 5e-41 39.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68671.1 GT:GENE sig12 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1220243..1221388 GB:FROM 1220243 GB:TO 1221388 GB:DIRECTION + GB:GENE sig12 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68671.1 LENGTH 381 SQ:AASEQ MNEALLRSLTPSVLGILVRRGADFAAAEDAVQDALVEAVRVWPADPPRDPKGWLVTVAWRRFLDATRADTARRRREDLVDDEPAPGPAPTVDDTLQLYFLCAHPSLTPSSAVALTLRAVGGLTTRQIAQAYLVPEATMGQRISRAKRTVSGVRFDQPGDVATVLRVLYLVFNEGYSGDVDLAAEAIRLTRQLTAAIDHPEVAGLLALMLLHHARRAARTKPDGSLVPLAEQNRSRWDTQLIAEGVEIVQAALARDRLGEFQAQAAIAALHTDAPTAEETDWVQIVEWYDELARLTDSPVVRLNRAVAVGEADGPRAGLAALAALDDSLPRHAAVAAYLHERDGDLATAARLYAEAAQKAPNLAERDHLTRQAARLNARGCR GT:EXON 1|1-381:0| BL:SWS:NREP 1 BL:SWS:REP 6->310|Y370_RHIME|5e-41|39.0|305/100| SEG 60->78|rrfldatradtarrrredl| SEG 202->218|agllalmllhharraar| SEG 311->330|adgpraglaalaalddslpr| SEG 346->356|ataarlyaeaa| RP:PDB:NREP 1 RP:PDB:REP 3->147|3dxjF|2e-05|8.3|145/349| HM:PFM:NREP 4 HM:PFM:REP 5->69|PF04542|5.7e-12|30.8|65/71|Sigma70_r2| HM:PFM:REP 98->148|PF08281|2.5e-10|27.5|51/54|Sigma70_r4_2| HM:PFM:REP 239->262|PF01316|0.0009|43.5|23/70|Arg_repressor| HM:PFM:REP 336->361|PF07719|0.001|23.1|26/34|TPR_2| RP:SCP:NREP 2 RP:SCP:REP 3->58|1h3lA|2e-04|21.4|56/75|a.177.1.1| RP:SCP:REP 79->182|1adtA3|2e-13|14.0|86/126|g.51.1.1| HM:SCP:REP 3->67|1h3lA_|9.8e-12|32.3|65/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 88->149|1or7A1|1.6e-06|27.4|62/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 239 OP:NHOMOORG 139 OP:PATTERN -------------------------------------------------------------------- -23-A---------211-------12------22227457-213-9------2-11-2--343-313324------------------------------11----13-1--------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43133211111----------1---------------1---------------------------------11-----1111111-111111121111-1111--------111-----112-----------------------------------------------111132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111---------------------------11-1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 145 STR:RPRED 38.1 SQ:SECSTR ##HHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccc########################################################################################################################################################################################################################################## DISOP:02AL 155-156, 376-378| PSIPRED ccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccc //