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Streptomyces avermitilis MA-4680 (save0)
Gene : sig13
DDBJ      :sig13        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  2/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:223 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   58->173 3dxjF PDBj 2e-07 6.9 %
:RPS:SCOP  113->174 1k78A1  a.4.1.5 * 3e-09 19.4 %
:HMM:SCOP  11->82 1h3lA_ a.177.1.1 * 2.2e-05 19.4 %
:HMM:SCOP  105->175 1rp3A2 a.4.13.2 * 1.2e-12 33.8 %
:RPS:PFM   117->169 PF08281 * Sigma70_r4_2 2e-07 45.3 %
:HMM:PFM   118->169 PF08281 * Sigma70_r4_2 1.9e-18 40.4 52/54  
:HMM:PFM   23->88 PF04542 * Sigma70_r2 2.2e-07 18.8 64/71  
:BLT:SWISS 75->173 NCCH_ALCXX 5e-06 30.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68707.1 GT:GENE sig13 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1262450..1263121 GB:FROM 1262450 GB:TO 1263121 GB:DIRECTION + GB:GENE sig13 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF08281: Sigma-70, region 4 GB:PROTEIN_ID BAC68707.1 LENGTH 223 SQ:AASEQ MGDTPRTDRANNADVEREFQVFYAAHYAQLVAQGTMLSDSLQEAEDAAQEACMAAMAKWDTIRSPYHWTKKAMSRKLVRDRQMRRARWYRRLLPQSPPDLEIPVPPRSSVDERMRALDVLAALRQLPPRQRQVMILLAECELDHQEIAELLGTTPNNVGVNVHHARRKLRLLLGQGSEPVPTGDSLDSVRRDDPLYALIHSTAVWLRQGIHAKQRADRKEGNR GT:EXON 1|1-223:0| BL:SWS:NREP 1 BL:SWS:REP 75->173|NCCH_ALCXX|5e-06|30.6|98/186| SEG 42->57|qeaedaaqeacmaama| RP:PDB:NREP 1 RP:PDB:REP 58->173|3dxjF|2e-07|6.9|116/349| RP:PFM:NREP 1 RP:PFM:REP 117->169|PF08281|2e-07|45.3|53/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 118->169|PF08281|1.9e-18|40.4|52/54|Sigma70_r4_2| HM:PFM:REP 23->88|PF04542|2.2e-07|18.8|64/71|Sigma70_r2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 1 RP:SCP:REP 113->174|1k78A1|3e-09|19.4|62/63|a.4.1.5| HM:SCP:REP 11->82|1h3lA_|2.2e-05|19.4|72/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 105->175|1rp3A2|1.2e-12|33.8|71/0|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2 OP:NHOMOORG 2 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 119 STR:RPRED 53.4 SQ:SECSTR #########################################################HHHcccTTccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHTT############################################### DISOP:02AL 1-2, 8-9, 172-189, 213-223| PSIPRED ccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccc //