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Streptomyces avermitilis MA-4680 (save0)
Gene : sig14
DDBJ      :sig14        putative RNA polymerase sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  889/915 : Eukaryota  19/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13b.52.2
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->286 3dxjF PDBj 5e-16 26.6 %
:RPS:PDB   44->191 1a41A PDBj 3e-20 9.5 %
:RPS:PDB   241->290 1bibA PDBj 2e-08 19.1 %
:RPS:SCOP  65->179 1aw8.1  b.52.2.1 * 3e-21 14.3 %
:RPS:SCOP  235->286 1ku3A  a.4.13.2 * 6e-08 25.0 %
:HMM:SCOP  26->139 1iw7F3 a.177.1.1 * 1.6e-28 35.4 %
:HMM:SCOP  142->222 1rp3A1 a.4.13.1 * 8.5e-16 36.4 %
:HMM:SCOP  205->291 1iw7F2 a.4.13.2 * 1.4e-13 29.9 %
:RPS:PFM   68->120 PF04542 * Sigma70_r2 6e-05 38.5 %
:RPS:PFM   239->286 PF04545 * Sigma70_r4 5e-05 43.8 %
:HMM:PFM   239->287 PF04545 * Sigma70_r4 6e-18 44.9 49/50  
:HMM:PFM   68->138 PF04542 * Sigma70_r2 3.6e-17 32.9 70/71  
:HMM:PFM   148->208 PF04539 * Sigma70_r3 1.1e-17 34.4 61/78  
:BLT:SWISS 39->274 RPOF_STRAU 3e-53 48.5 %
:PROS 93->106|PS00715|SIGMA70_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68797.1 GT:GENE sig14 GT:PRODUCT putative RNA polymerase sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1375028..1375915 GB:FROM 1375028 GB:TO 1375915 GB:DIRECTION + GB:GENE sig14 GB:PRODUCT putative RNA polymerase sigma factor GB:NOTE RNA polymerase alternative sigma factor, PF04539: Sigma-70 region 3 GB:PROTEIN_ID BAC68797.1 LENGTH 295 SQ:AASEQ MTAVAAPAATRTTGQHPTAPAHEVELDAIADPLAVSPKDARELSRHFFARLSVLEEGTQDYQYVRNTLIEMNLTLVRYAASRFRSRGSGEMEDIVQVGTIGLIKAIDRFELSREVEFASFAVPYIVGEIKRFFRDTSWAVHVPRRLQEARVELAQATDELSRRTGRTPTVRELAELMSLTEEEVIEARKAANAYRSSSLDASLSGDGSADNESVLADFIGREETALELIEDMHSLAPLVAQLDERDRRILHLRFVDELTQAQIGERLGISQMHVSRLINKIITTLRAGLLSECTG GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 39->274|RPOF_STRAU|3e-53|48.5|231/297| PROS 93->106|PS00715|SIGMA70_1|PDOC00592| SEG 2->13|tavaapaatrtt| SEG 196->209|sssldaslsgdgsa| BL:PDB:NREP 1 BL:PDB:REP 22->286|3dxjF|5e-16|26.6|256/349| RP:PDB:NREP 2 RP:PDB:REP 44->191|1a41A|3e-20|9.5|147/221| RP:PDB:REP 241->290|1bibA|2e-08|19.1|47/294| RP:PFM:NREP 2 RP:PFM:REP 68->120|PF04542|6e-05|38.5|52/70|Sigma70_r2| RP:PFM:REP 239->286|PF04545|5e-05|43.8|48/49|Sigma70_r4| HM:PFM:NREP 3 HM:PFM:REP 239->287|PF04545|6e-18|44.9|49/50|Sigma70_r4| HM:PFM:REP 68->138|PF04542|3.6e-17|32.9|70/71|Sigma70_r2| HM:PFM:REP 148->208|PF04539|1.1e-17|34.4|61/78|Sigma70_r3| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 2 RP:SCP:REP 65->179|1aw8.1|3e-21|14.3|112/115|b.52.2.1| RP:SCP:REP 235->286|1ku3A|6e-08|25.0|52/61|a.4.13.2| HM:SCP:REP 26->139|1iw7F3|1.6e-28|35.4|113/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 142->222|1rp3A1|8.5e-16|36.4|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 205->291|1iw7F2|1.4e-13|29.9|87/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2152 OP:NHOMOORG 908 OP:PATTERN -------------------------------------------------------------------- 1124712122222234433-36223333333345557465433451123332222111114472754DDD611111112112711234----1-11----------11221111111222222211-1111111114554611155M7965545688676897454488A557435559535532-1122153544444444344444456555544446564332222226422222222222222222222111211211111111111111111111111111111111111111111111111111111111111111155645555555545467443555546325645555656456545565211435111121111111111121111111111111111-11112111111121122212221111111111222211111111111111111111111111111111111111111111111111221211111444454233433322333424444343311333232112113223223222221111111322122212132331223332223423233111114231111111111111222222211111223423432232234333434333433424431-1422311111132333333332333333-333332323333323322322233333233333333233333333132133113434443434431111111111222113231111111111111111111111111232222111111111122211111111124444222224333311111111111111112322111111111111321111-1-1111111111-111--1112131112111221 -------1----------------------------------------------------------------------------------------------------2-------------------------------------------------1----------------3111B111--41-4-32-21---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 271 STR:RPRED 91.9 SQ:SECSTR #####################cccccccccccTTTHHHHHHHcGGGEEEETTEEEEcEEETTTEEEccEEETTcccHHHHHHHccTTcTTccccTTccHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHEHHHHHHHcccccHHHHHHHHHHHHHHTTcTTHHHHHTTccHHHHcHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTcEE### DISOP:02AL 1-4, 6-22, 30-43, 291-295| PSIPRED cccccccHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccc //