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Streptomyces avermitilis MA-4680 (save0)
Gene : sig15
DDBJ      :sig15        putative RNA polymerase sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  895/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->174 1ku2A PDBj 6e-17 32.4 %
:RPS:PDB   50->188 1a41A PDBj 3e-19 8.0 %
:RPS:PDB   238->280 1bibA PDBj 1e-05 16.3 %
:RPS:SCOP  44->132 1sigA  a.177.1.1 * 3e-22 32.6 %
:RPS:SCOP  137->188 1l0oC  a.4.13.2 * 2e-10 40.4 %
:RPS:SCOP  231->282 1ku3A  a.4.13.2 * 4e-08 23.1 %
:HMM:SCOP  24->136 1iw7F3 a.177.1.1 * 3.3e-31 36.3 %
:HMM:SCOP  139->218 1rp3A1 a.4.13.1 * 2.4e-16 36.4 %
:HMM:SCOP  201->296 1iw7F2 a.4.13.2 * 2.7e-14 21.9 %
:RPS:PFM   66->117 PF04542 * Sigma70_r2 2e-06 38.5 %
:HMM:PFM   235->282 PF04545 * Sigma70_r4 2.5e-18 39.6 48/50  
:HMM:PFM   66->135 PF04542 * Sigma70_r2 2.1e-18 34.3 70/71  
:HMM:PFM   145->218 PF04539 * Sigma70_r3 2.9e-17 28.4 74/78  
:BLT:SWISS 37->283 RPOF_STRCO 7e-49 43.0 %
:PROS 90->103|PS00715|SIGMA70_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68861.1 GT:GENE sig15 GT:PRODUCT putative RNA polymerase sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1439664..1440551 GB:FROM 1439664 GB:TO 1440551 GB:DIRECTION + GB:GENE sig15 GB:PRODUCT putative RNA polymerase sigma factor GB:NOTE similar to SCO7278, RNA polymerase alternative sigma factor, PF04539: Sigma-70 region 3 GB:PROTEIN_ID BAC68861.1 LENGTH 295 SQ:AASEQ MDTAMSRSMVKDEATRTATGEGSLPHIVDPRTVAPRDARELSRQFFRRLSELEEGTHDYQYARNTLIEMNMSLVRFAAGRFRNRGDDMEDIVQVGMIGLIKAIDRFEISREVEFTSFALPYIVGEIKRFFRDTTWAVHVPRRLQELRVELAKAREELSSRLDREPSVAELATLMNLSENEVVEAQIASNGYNSSSLDAALSGDDQEGEAVLADFIGEEDDGMQLVEDFHTLAPLVAELSDRDRQIIHMRFVEEATQADIGARLGCSQMHVSRLIKRIIEQLRTGMLSDLHRVESA GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 37->283|RPOF_STRCO|7e-49|43.0|244/287| PROS 90->103|PS00715|SIGMA70_1|PDOC00592| SEG 193->204|sssldaalsgdd| BL:PDB:NREP 1 BL:PDB:REP 1->174|1ku2A|6e-17|32.4|170/240| RP:PDB:NREP 2 RP:PDB:REP 50->188|1a41A|3e-19|8.0|138/221| RP:PDB:REP 238->280|1bibA|1e-05|16.3|43/294| RP:PFM:NREP 1 RP:PFM:REP 66->117|PF04542|2e-06|38.5|52/70|Sigma70_r2| HM:PFM:NREP 3 HM:PFM:REP 235->282|PF04545|2.5e-18|39.6|48/50|Sigma70_r4| HM:PFM:REP 66->135|PF04542|2.1e-18|34.3|70/71|Sigma70_r2| HM:PFM:REP 145->218|PF04539|2.9e-17|28.4|74/78|Sigma70_r3| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 3 RP:SCP:REP 44->132|1sigA|3e-22|32.6|89/305|a.177.1.1| RP:SCP:REP 137->188|1l0oC|2e-10|40.4|52/57|a.4.13.2| RP:SCP:REP 231->282|1ku3A|4e-08|23.1|52/61|a.4.13.2| HM:SCP:REP 24->136|1iw7F3|3.3e-31|36.3|113/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 139->218|1rp3A1|2.4e-16|36.4|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 201->296|1iw7F2|2.7e-14|21.9|96/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2146 OP:NHOMOORG 916 OP:PATTERN -------------------------------------------------------------------- 2124722222222234433-36223333333345557465433441122332222111114472755DED611111112112612344----1-11-111----1211111111111222222211-1111111114555611155M8A76655688676896564599A657445559545432-11222435444444443444444446655444555643222222285222222222222222222221112112111111111111111111111111111111111111111111111111111111111111111555344444454454553333335453255455445355565355652-1425111111111111111121121111111111111-11112111211121122222221112111121222211111111111111111211111111111111111111111111111111211211111322233233434422333323344443211333232222113124324223221111111223223111123121222211223433234112114231111111111111111221211111332322423222332222223222222322331-1423311111132334333332333333-33333232333332332232223333323333333333333333313213311343444343443112122222222211233111111111111111111111122133222222222222222221111111111344433333333331111111111111121232211111112121132111111-1111111111-111-11111121112111221 -------1----------------------------------------------------------------------------------------------------1------------------------------------------------------------------3111B1112141-6-41221---3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 285 STR:RPRED 96.6 SQ:SECSTR ccHHHHHHHHHHHHHTTcccccTcccccccTTTHHHHHHHcccccccccTEEEEcEEETTTEEEccEEETTcccHHHHHHHccTTTTccccTTccHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHTHHHcccccHHHHHHHHHHHHHHTTcTTHHHHHTTccHHHHcTcccccTTcccTTcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHT########## DISOP:02AL 16-32, 292-295| PSIPRED ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHccccccHHcccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //