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Streptomyces avermitilis MA-4680 (save0)
Gene : sig16
DDBJ      :sig16        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  137/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.118.8a.177.1a.4.13g.51.1
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   6->160 3dxjF PDBj 1e-08 5.8 %
:RPS:PDB   157->327 3btaA PDBj 2e-13 6.1 %
:RPS:SCOP  6->94 1or7A2  a.177.1.1 * 2e-09 17.0 %
:RPS:SCOP  65->192 1adtA3  g.51.1.1 * 3e-14 13.1 %
:RPS:SCOP  298->382 2c2lA1  a.118.8.1 * 7e-04 8.8 %
:HMM:SCOP  5->95 1or7A2 a.177.1.1 * 7.5e-14 27.8 %
:HMM:SCOP  96->161 1or7A1 a.4.13.2 * 4e-08 27.3 %
:HMM:PFM   9->74 PF04542 * Sigma70_r2 1.7e-14 28.8 66/71  
:HMM:PFM   106->157 PF08281 * Sigma70_r4_2 3.8e-11 28.8 52/54  
:HMM:PFM   350->377 PF07719 * TPR_2 0.00019 25.0 28/34  
:BLT:SWISS 15->396 Y370_RHIME 3e-60 36.1 %
:PROS 129->156|PS00622|HTH_LUXR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68905.1 GT:GENE sig16 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(1485526..1486716) GB:FROM 1485526 GB:TO 1486716 GB:DIRECTION - GB:GENE sig16 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68905.1 LENGTH 396 SQ:AASEQ MAVGVEEVFRAEYGRAVAVLVRFLGDIDLAEEAVQDAFTTALRTWPESGVPPSPAGWIITTARNRAIDRLRRESTREARHAEAAQLYAPGTPAEEGPVRDDRLRLIFTCCHPALATQAQVALTLRLLGGLTTAQIARAFLVPEPTMAQRLVRAKAKIRDARIPYRIPRDADLPDRVRGVLAVVYLIFNEGYGGREDLCAEALRLGRLLAELMPDEPEVIGLLALMLLIEARRPARETPEGTLILLADQERGRWERGLIAEGQALVRRCLRRDQPGPYQIQAAINAVHSDAPTAAATDWRQILALYDQLMALAPSPVVALNRAVAVAETAGPQPALDLVDALDLDGYHAFHAVRADLLRRLGRGTEAVRAYEAAIARTDNAAERGYLERRRAELTPE GT:EXON 1|1-396:0| BL:SWS:NREP 1 BL:SWS:REP 15->396|Y370_RHIME|3e-60|36.1|382/423| PROS 129->156|PS00622|HTH_LUXR_1|PDOC00542| SEG 113->132|alatqaqvaltlrllggltt| SEG 197->211|lcaealrlgrllael| SEG 334->344|aldlvdaldld| RP:PDB:NREP 2 RP:PDB:REP 6->160|3dxjF|1e-08|5.8|155/349| RP:PDB:REP 157->327|3btaA|2e-13|6.1|164/1277| HM:PFM:NREP 3 HM:PFM:REP 9->74|PF04542|1.7e-14|28.8|66/71|Sigma70_r2| HM:PFM:REP 106->157|PF08281|3.8e-11|28.8|52/54|Sigma70_r4_2| HM:PFM:REP 350->377|PF07719|0.00019|25.0|28/34|TPR_2| RP:SCP:NREP 3 RP:SCP:REP 6->94|1or7A2|2e-09|17.0|88/113|a.177.1.1| RP:SCP:REP 65->192|1adtA3|3e-14|13.1|99/126|g.51.1.1| RP:SCP:REP 298->382|2c2lA1|7e-04|8.8|80/201|a.118.8.1| HM:SCP:REP 5->95|1or7A2|7.5e-14|27.8|90/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 96->161|1or7A1|4e-08|27.3|66/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 244 OP:NHOMOORG 140 OP:PATTERN -------------------------------------------------------------------- -23-A---------211-------12------23337357-213-9------2-11-2--343-313324------------------------------11----13-1--------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43133311111----------1---------------1---------------------------------11-----1111111-111111221111-1111--------111-----112-----------------------------------------------111132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111---------------------------11-1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 315 STR:RPRED 79.5 SQ:SECSTR #####HHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTcccccccccccccccTTcccccccEEEEEcccccccccEEEEEEETTEEEEEEEcccccGGGccccccc##cccccccccccTTTT####ccHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHccccE#EEEEcTTccEEEEEccEEEEEccccTTccEEEccccccccTTTccccccEE##################################################################### DISOP:02AL 167-171, 394-396| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccc //