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Streptomyces avermitilis MA-4680 (save0)
Gene : sig2
DDBJ      :sig2         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:163 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->141 2q1zA PDBj 3e-04 27.6 %
:RPS:PDB   1->141 3dxjF PDBj 3e-09 10.0 %
:RPS:SCOP  6->95 1or7A2  a.177.1.1 * 2e-07 19.1 %
:HMM:SCOP  1->72 1h3lA_ a.177.1.1 * 1.1e-14 34.7 %
:HMM:SCOP  90->157 1or7A1 a.4.13.2 * 6.1e-08 27.9 %
:HMM:PFM   101->151 PF08281 * Sigma70_r4_2 2.5e-13 39.2 51/54  
:HMM:PFM   12->76 PF04542 * Sigma70_r2 1.2e-12 26.2 65/71  
:BLT:SWISS 25->141 RPOE_STRAW 2e-06 23.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67802.1 GT:GENE sig2 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 103255..103746 GB:FROM 103255 GB:TO 103746 GB:DIRECTION + GB:GENE sig2 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE similar to SCO3736, PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC67802.1 LENGTH 163 SQ:AASEQ MKRSRERAASELFAALYPRLAGWCRRLVDDDETAHEIASEAFTRLWARWTSVAEPRGFLYVTAANLVRDHWRKLERERRAVHRVTAEAALRPPSEQADPSVRLLVQSLPERLRVPILLHYYADMPIREVSVLTGRKEGTIKADLHAARELLRAHLRRSLDHTL GT:EXON 1|1-163:0| BL:SWS:NREP 1 BL:SWS:REP 25->141|RPOE_STRAW|2e-06|23.9|117/179| SEG 142->157|adlhaarellrahlrr| BL:PDB:NREP 1 BL:PDB:REP 6->141|2q1zA|3e-04|27.6|134/176| RP:PDB:NREP 1 RP:PDB:REP 1->141|3dxjF|3e-09|10.0|140/349| HM:PFM:NREP 2 HM:PFM:REP 101->151|PF08281|2.5e-13|39.2|51/54|Sigma70_r4_2| HM:PFM:REP 12->76|PF04542|1.2e-12|26.2|65/71|Sigma70_r2| RP:SCP:NREP 1 RP:SCP:REP 6->95|1or7A2|2e-07|19.1|89/113|a.177.1.1| HM:SCP:REP 1->72|1h3lA_|1.1e-14|34.7|72/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 90->157|1or7A1|6.1e-08|27.9|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 6 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- ----2---------------------------------------------------------1---111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 141 STR:RPRED 86.5 SQ:SECSTR HHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGG###################### DISOP:02AL 1-4, 159-163| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccc //