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Streptomyces avermitilis MA-4680 (save0)
Gene : sig3
DDBJ      :sig3         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  170/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13d.17.4
:312 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->69 1h3lB PDBj 3e-04 34.5 %
:RPS:PDB   9->154 3dxjF PDBj 2e-15 11.8 %
:RPS:PDB   168->284 3dmcA PDBj 8e-06 14.0 %
:RPS:SCOP  9->69 1h3lA  a.177.1.1 * 5e-11 29.5 %
:RPS:SCOP  109->154 1k78A1  a.4.1.5 * 1e-04 15.2 %
:RPS:SCOP  172->294 3dm8A1  d.17.4.20 * 2e-05 13.1 %
:HMM:SCOP  9->69 1h3lA_ a.177.1.1 * 5e-13 44.3 %
:HMM:SCOP  73->166 1iw7F2 a.4.13.2 * 1.4e-09 27.2 %
:HMM:SCOP  171->296 1qjgA_ d.17.4.3 * 1.4e-11 31.3 %
:RPS:PFM   19->69 PF04542 * Sigma70_r2 2e-05 49.0 %
:HMM:PFM   10->73 PF04542 * Sigma70_r2 1.1e-19 45.3 64/71  
:HMM:PFM   108->158 PF08281 * Sigma70_r4_2 2.4e-16 31.4 51/54  
:HMM:PFM   207->253 PF05752 * Calici_MSP 0.00012 37.0 46/167  
:BLT:SWISS 4->154 SIGW_BACSU 3e-06 28.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68134.1 GT:GENE sig3 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(573907..574845) GB:FROM 573907 GB:TO 574845 GB:DIRECTION - GB:GENE sig3 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE similar to SCO0159, PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68134.1 LENGTH 312 SQ:AASEQ MDIAAIDRFEASQGRLASLAYRLLGSAADAEDAVQDTFLRWQAPYRERVEVPEAWLTKVVTNLCLDRLRSAQARHEQAAGAWLPEPLLDSDPMLGPADTFEQRESVSLAVLTLLERLSPVERAVYVLREAFSYSHAEIAGILDITESASQQHVHRARIRVAAERRRGSETDPASARRVVEEFLAAATSGRTERLVALLTDDVTAVSDGAGLSKRLLHYKTRERVASYVRAGFKPTPAKRRLAGGSPAFYIALVNGSPAVLAVVDDRVVGAVAFEVSDGKVASLRGIAAADRLARLNEAWRQHEPDAPAINAW GT:EXON 1|1-312:0| BL:SWS:NREP 1 BL:SWS:REP 4->154|SIGW_BACSU|3e-06|28.4|148/187| SEG 155->166|rarirvaaerrr| SEG 258->272|avlavvddrvvgava| BL:PDB:NREP 1 BL:PDB:REP 15->69|1h3lB|3e-04|34.5|55/78| RP:PDB:NREP 2 RP:PDB:REP 9->154|3dxjF|2e-15|11.8|144/349| RP:PDB:REP 168->284|3dmcA|8e-06|14.0|114/130| RP:PFM:NREP 1 RP:PFM:REP 19->69|PF04542|2e-05|49.0|51/70|Sigma70_r2| HM:PFM:NREP 3 HM:PFM:REP 10->73|PF04542|1.1e-19|45.3|64/71|Sigma70_r2| HM:PFM:REP 108->158|PF08281|2.4e-16|31.4|51/54|Sigma70_r4_2| HM:PFM:REP 207->253|PF05752|0.00012|37.0|46/167|Calici_MSP| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 3 RP:SCP:REP 9->69|1h3lA|5e-11|29.5|61/75|a.177.1.1| RP:SCP:REP 109->154|1k78A1|1e-04|15.2|46/63|a.4.1.5| RP:SCP:REP 172->294|3dm8A1|2e-05|13.1|122/135|d.17.4.20| HM:SCP:REP 9->69|1h3lA_|5e-13|44.3|61/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 73->166|1iw7F2|1.4e-09|27.2|92/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 171->296|1qjgA_|1.4e-11|31.3|115/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 374 OP:NHOMOORG 172 OP:PATTERN -------------------------------------------------------------------- -12-J------1--66633-34--453333326444835413253B-2------------533-2357G7------------1----------------------1---1--------------------------1111----1-1-------------------1---------------------------111111-1-111111-111--111-------------15----------------------------------------------------------------------------------------------------------------------1---------------------3--1111-------1---112--21----------1-121-11-1-42-1---111111112--1---11-11-11-------------1----------------------------------11--111-233322-11111132111111211-1-1--11----111-1-1---------------------------------------------1-832534--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1121--111--1-----------------------------22----------------11---------------------------------------------------1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 271 STR:RPRED 86.9 SQ:SECSTR ########HHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHcTccccHHHHHHHHHHHHHHHHHHHHcccc##cccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccc#############TcHHHHHHHHHHHHHHHHHHHcccHHHHTEEEEEEEcGGGcEEEEcHHHHHHHHHHHHHTcTTcEEEEEEEEEEEcccEEEEEEEEEEEE#TTTTEEEEEEEEEEEEEETTEEEEEEEEEcHHHHHHH################# DISOP:02AL 162-175, 306-308| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHccHHHEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEccEEEEEEEEEEEccEEEEEEEEEcHHHHccccHHccccccccHHHHcc //