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Streptomyces avermitilis MA-4680 (save0)
Gene : sig5
DDBJ      :sig5         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  185/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   43->114 2o7gB PDBj 8e-17 53.5 %
:BLT:PDB   142->188 2o8xA PDBj 3e-08 51.1 %
:RPS:PDB   43->188 3dxjF PDBj 1e-15 13.0 %
:RPS:SCOP  49->114 1h3lA  a.177.1.1 * 5e-15 24.2 %
:HMM:SCOP  40->114 1h3lA_ a.177.1.1 * 1.4e-21 44.0 %
:HMM:SCOP  138->205 1or7A1 a.4.13.2 * 4.5e-12 45.6 %
:RPS:PFM   57->114 PF04542 * Sigma70_r2 1e-04 41.4 %
:HMM:PFM   51->115 PF04542 * Sigma70_r2 5.8e-19 35.4 65/71  
:HMM:PFM   148->199 PF08281 * Sigma70_r4_2 9.1e-18 48.1 52/54  
:BLT:SWISS 43->188 RPSC_MYCTU 4e-28 50.0 %
:PROS 73->104|PS01063|SIGMA70_ECF
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68324.1 GT:GENE sig5 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(767899..768552) GB:FROM 767899 GB:TO 768552 GB:DIRECTION - GB:GENE sig5 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68324.1 LENGTH 217 SQ:AASEQ MITPVLPVSREKRDAGRKAADQPGAMAWPDDAATAWALAARAGDPDAVDRFVRALHPDVVRYITHLSSDRQLADDLAQDTFLRALGSLHRFEGRSSARTWLLSIARRTVIDNVRYTAARPRLRDTDDWTVWAERAQPSGLPGFEDGVALLDLLDALPAERREAFVLTQLTGLPYEEAAEASGCPVGTIRSRVARARATLVALLVEAEESRAPAAVAA GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 43->188|RPSC_MYCTU|4e-28|50.0|136/185| PROS 73->104|PS01063|SIGMA70_ECF|PDOC00814| SEG 25->42|amawpddaatawalaara| SEG 148->156|alldlldal| SEG 189->216|rsrvararatlvallveaeesrapaava| BL:PDB:NREP 2 BL:PDB:REP 43->114|2o7gB|8e-17|53.5|71/89| BL:PDB:REP 142->188|2o8xA|3e-08|51.1|47/61| RP:PDB:NREP 1 RP:PDB:REP 43->188|3dxjF|1e-15|13.0|146/349| RP:PFM:NREP 1 RP:PFM:REP 57->114|PF04542|1e-04|41.4|58/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 51->115|PF04542|5.8e-19|35.4|65/71|Sigma70_r2| HM:PFM:REP 148->199|PF08281|9.1e-18|48.1|52/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 1 RP:SCP:REP 49->114|1h3lA|5e-15|24.2|66/75|a.177.1.1| HM:SCP:REP 40->114|1h3lA_|1.4e-21|44.0|75/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 138->205|1or7A1|4.5e-12|45.6|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 243 OP:NHOMOORG 185 OP:PATTERN -------------------------------------------------------------------- 1---112111111111111-1-112-111112------11----2---11----------22--2-13322-----------1--------------------------------------------------------------1-----------------------------------------------1-----------------2211---11-1---------3-----------------------------------------------------------------------------------------------------------------------1----11---------------1-----1-----1211-1121111111111111111-44A44542211-111122-2221111--121-111111-----------------------------------------------11-1111111-------1111--12111112--1-1----11-1111111121-11------------------1-----------------------1-------------------------------------1--1------------11----1--1-1----1111--------------------------------------------------------------------------------------------1---------111----------------------------11111-111-----------------------------11--11111111-1------1-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 67.3 SQ:SECSTR ##########################################HHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGG############################# DISOP:02AL 6-34, 202-217| PSIPRED cccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccc //