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Streptomyces avermitilis MA-4680 (save0)
Gene : sig6
DDBJ      :sig6         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  153/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13d.17.4
:304 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   14->167 3dxjF PDBj 1e-14 12.1 %
:RPS:PDB   182->303 3dm8A PDBj 8e-10 13.9 %
:RPS:SCOP  14->79 1iw7F3  a.177.1.1 * 5e-09 12.5 %
:RPS:SCOP  182->303 3dm8A1  d.17.4.20 * 1e-10 13.9 %
:HMM:SCOP  14->73 1h3lA_ a.177.1.1 * 1e-09 37.3 %
:HMM:SCOP  114->175 1or7A1 a.4.13.2 * 1.1e-07 22.6 %
:HMM:SCOP  181->301 1qjgA_ d.17.4.3 * 3.8e-11 28.7 %
:HMM:PFM   14->76 PF04542 * Sigma70_r2 5.3e-15 38.1 63/71  
:HMM:PFM   124->174 PF08281 * Sigma70_r4_2 4.2e-12 25.5 51/54  
:HMM:PFM   162->216 PF00106 * adh_short 0.00058 24.5 53/167  
:BLT:SWISS 184->266 ILVD_AGRRK 8e-05 38.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68373.1 GT:GENE sig6 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 820435..821349 GB:FROM 820435 GB:TO 821349 GB:DIRECTION + GB:GENE sig6 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE similar to SCO0414, PF04542: Sigma-70 region 2 GB:PROTEIN_ID BAC68373.1 LENGTH 304 SQ:AASEQ MGTVGSTDGIAGERHQLINVAYRLLGSVTEAEDAVQDAYARWYALPRSRQEEILSPGAWLTTVTSRICLDLLGSARARRERYVGAWLPEPLPDRTERDRAGGAGPTGPADPVDQIVLDESVAMAFLVVLESMTPAERVAFVLHDVFRYPFAEIADVLGRTPAACKQLAASARRRVSVARTPVTATGQADVVRHVKEAWETKDIAALVDLLNPAAVMTADGGGMVGTVLRPVEGGARIAQYMVAIADKAPGLELLERSVNGVPGLVAQRAGVVVTVASFDVSDGRVTRIWAVRNPEKLRPWAREG GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 184->266|ILVD_AGRRK|8e-05|38.2|76/100| SEG 100->111|aggagptgpadp| SEG 168->179|aasarrrvsvar| RP:PDB:NREP 2 RP:PDB:REP 14->167|3dxjF|1e-14|12.1|141/349| RP:PDB:REP 182->303|3dm8A|8e-10|13.9|122/135| HM:PFM:NREP 3 HM:PFM:REP 14->76|PF04542|5.3e-15|38.1|63/71|Sigma70_r2| HM:PFM:REP 124->174|PF08281|4.2e-12|25.5|51/54|Sigma70_r4_2| HM:PFM:REP 162->216|PF00106|0.00058|24.5|53/167|adh_short| RP:SCP:NREP 2 RP:SCP:REP 14->79|1iw7F3|5e-09|12.5|64/184|a.177.1.1| RP:SCP:REP 182->303|3dm8A1|1e-10|13.9|122/135|d.17.4.20| HM:SCP:REP 14->73|1h3lA_|1e-09|37.3|59/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 114->175|1or7A1|1.1e-07|22.6|62/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 181->301|1qjgA_|3.8e-11|28.7|115/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 320 OP:NHOMOORG 155 OP:PATTERN -------------------------------------------------------------------- -11-C---------66633-34--353333326444824313261A-1------------533-1157H6------------1----------------------1---1----------------------------------1-1-------------------1---------------------------111111-1-111111-111--111-------------14--------------------------------------------------------------------------------------------------------------------------------------------2--1111-------1---111--1-----------1-121-11-1-11-1---111111111------11-11-1--------------1----------------------------------11--111-122221-11111132111111211-1-1--11----111-1-1-----------------------------------------------722334--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------22----------------11---------------------------------------------------1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 87.2 SQ:SECSTR #############HHHHHHHHGGGccccccHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHH##HHHcccccccHHHHHHHHHHHHHHH###########HHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTc############ccccccHHHHHHHHHHHHHHHcccHHHHHHEEEEEEEEEEccTTTcTTcEEEEcHHHHHHHHHHHHHHEEEEEEEEEEEcccEEEEEEEEEEEETEEEEEEETTEEEEEEEEEcHHHHHHHHHT# DISOP:02AL 1-2, 178-184, 301-304| PSIPRED cccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHcccEEEEEcccccccccccccccHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEcccEEEEEEEEEEccEEEEEEEEEcHHHHccccccc //