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Streptomyces avermitilis MA-4680 (save0)
Gene : sig60
DDBJ      :sig60        putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.13a.4.6
:200 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   31->185 3dxjF PDBj 7e-07 7.1 %
:RPS:SCOP  131->185 1yioA1  a.4.6.2 * 3e-07 27.8 %
:HMM:SCOP  117->186 1rp3A2 a.4.13.2 * 5e-08 32.9 %
:RPS:PFM   131->181 PF08281 * Sigma70_r4_2 2e-05 37.3 %
:HMM:PFM   131->181 PF08281 * Sigma70_r4_2 1.3e-15 37.3 51/54  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC67922.1 GT:GENE sig60 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(248139..248741) GB:FROM 248139 GB:TO 248741 GB:DIRECTION - GB:GENE sig60 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF08281: Sigma-70, region 4 GB:PROTEIN_ID BAC67922.1 LENGTH 200 SQ:AASEQ MGNGDVSTDVSPQDGGHGQPVQAPPALPLDFEGFYLGHQEFFHDFSEIHLGSRRVAEQVVHQVFLEILGGWDELLQQGDLEQQTLSVLHRCVTRRLEEDGRSPAFLINGPIAKNLEAVRSQLELSNSAGGLYEAILELPTRQFTVIVLRHLLGYPTKRIARYMGLDSRTVDYHGRKGKERLRIRLGLPTAPGKDKKGAGQ GT:EXON 1|1-200:0| SEG 72->85|dellqqgdleqqtl| RP:PDB:NREP 1 RP:PDB:REP 31->185|3dxjF|7e-07|7.1|155/349| RP:PFM:NREP 1 RP:PFM:REP 131->181|PF08281|2e-05|37.3|51/54|Sigma70_r4_2| HM:PFM:NREP 1 HM:PFM:REP 131->181|PF08281|1.3e-15|37.3|51/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 1 RP:SCP:REP 131->185|1yioA1|3e-07|27.8|54/70|a.4.6.2| HM:SCP:REP 117->186|1rp3A2|5e-08|32.9|70/0|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 155 STR:RPRED 77.5 SQ:SECSTR ##############################HHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHH############### DISOP:02AL 1-4, 13-24, 185-200| PSIPRED ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccc //