[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : sig8
DDBJ      :sig8         putative RNA polymerase sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  671/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:279 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->157 1iw7F PDBj 8e-11 30.9 %
:BLT:PDB   225->273 1sc5A PDBj 3e-04 32.7 %
:RPS:PDB   80->158 1aw8E PDBj 9e-17 17.1 %
:RPS:PDB   213->272 2ao9C PDBj 1e-06 13.3 %
:RPS:SCOP  14->123 1sigA  a.177.1.1 * 5e-16 27.5 %
:RPS:SCOP  128->179 1l0oC  a.4.13.2 * 3e-04 30.8 %
:RPS:SCOP  215->272 1k78A1  a.4.1.5 * 3e-10 22.4 %
:HMM:SCOP  14->127 1iw7F3 a.177.1.1 * 2.3e-27 32.7 %
:HMM:SCOP  130->208 1rp3A1 a.4.13.1 * 1.3e-15 33.8 %
:HMM:SCOP  191->275 1iw7F2 a.4.13.2 * 2.3e-17 34.1 %
:RPS:PFM   225->272 PF04545 * Sigma70_r4 1e-05 43.8 %
:HMM:PFM   225->273 PF04545 * Sigma70_r4 9e-21 42.9 49/50  
:HMM:PFM   56->126 PF04542 * Sigma70_r2 5e-17 31.4 70/71  
:HMM:PFM   137->203 PF04539 * Sigma70_r3 9.5e-15 28.4 67/78  
:BLT:SWISS 27->272 RPOF_STRCO 2e-41 40.7 %
:PROS 81->94|PS00715|SIGMA70_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68451.1 GT:GENE sig8 GT:PRODUCT putative RNA polymerase sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 890067..890906 GB:FROM 890067 GB:TO 890906 GB:DIRECTION + GB:GENE sig8 GB:PRODUCT putative RNA polymerase sigma factor GB:NOTE similar to SCO0600:sigJ, RNA polymerase alternative sigma factor, PF04545: Sigma-70, region 4 GB:PROTEIN_ID BAC68451.1 LENGTH 279 SQ:AASEQ MTVTEATRARTVALPEIADPSGVAPKDARQLSRLFFDRLAVLEEGTPEYQYARNTLIEMNVTLVRFAAARFRSRSQDEMEDIVQVGTIGLIKAIDRFELTREVEFTSFAVPYIVGEIKRFFRDTSWAVHVPRRLQEARIQLAKATEELQSRLDRMPTVKELSELMCLSEEEVNEARLASNGYTSSSLDATISSSNDGEAALADFIGTDDNALELVEDFNALAPMIAELDDRERRIIHMRFVDELTQAQIGEHLGVSQMHVSRLLSRTLAKLREGMLTTN GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 27->272|RPOF_STRCO|2e-41|40.7|243/287| PROS 81->94|PS00715|SIGMA70_1|PDOC00592| SEG 2->13|tvteatrartva| SEG 65->75|rfaaarfrsrs| SEG 160->171|elselmclseee| SEG 184->194|sssldatisss| BL:PDB:NREP 2 BL:PDB:REP 14->157|1iw7F|8e-11|30.9|139/345| BL:PDB:REP 225->273|1sc5A|3e-04|32.7|49/228| RP:PDB:NREP 2 RP:PDB:REP 80->158|1aw8E|9e-17|17.1|76/90| RP:PDB:REP 213->272|2ao9C|1e-06|13.3|60/117| RP:PFM:NREP 1 RP:PFM:REP 225->272|PF04545|1e-05|43.8|48/49|Sigma70_r4| HM:PFM:NREP 3 HM:PFM:REP 225->273|PF04545|9e-21|42.9|49/50|Sigma70_r4| HM:PFM:REP 56->126|PF04542|5e-17|31.4|70/71|Sigma70_r2| HM:PFM:REP 137->203|PF04539|9.5e-15|28.4|67/78|Sigma70_r3| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 3 RP:SCP:REP 14->123|1sigA|5e-16|27.5|102/305|a.177.1.1| RP:SCP:REP 128->179|1l0oC|3e-04|30.8|52/57|a.4.13.2| RP:SCP:REP 215->272|1k78A1|3e-10|22.4|58/63|a.4.1.5| HM:SCP:REP 14->127|1iw7F3|2.3e-27|32.7|113/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 130->208|1rp3A1|1.3e-15|33.8|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 191->275|1iw7F2|2.3e-17|34.1|85/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1174 OP:NHOMOORG 676 OP:PATTERN -------------------------------------------------------------------- 1122611111112234433-36223333333344447344322321121221222111--2271644BCA61111111211241-121----1---------------1--------111----1-----------122441114393622212244-----1212255521-1-111-1--111------33444444444344444444444444434443312222226322222222222222222222---1--2-----------1---111111111111111111-11111111111111111111111111111533223333333232332222224132232222223322343322242---11111111111111111111111111111111111-111121111-111111111111111111111111111111111111111111111------------11-11111111111111111111---------------------------------------1------2--211--1-1--------11--212---11111111111112122121-----1----1--1111111-1111-11--1--11---1211111121111221111111111111-1-22211111122122222222222222-222222222222212211111122212222222222222222212121122112222222222221111-----1111111211111---1111111-11111111112211111111111111111----------222211111112331111111111-------1------111111111-1111--------1-----1-1--11-1-1---1---11- -------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1--------------11---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 262 STR:RPRED 93.9 SQ:SECSTR #############cccccTTHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHTHHHHHHHHGGGcccccccHHHHHHHHTccTTcEEEEEETTTccEEEEEcEEEcTTcccEEccGGGGcccGTccTTccEEEEccccccHHHHTTcccccHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHT#### DISOP:02AL 14-28, 277-279| PSIPRED ccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc //