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Streptomyces avermitilis MA-4680 (save0)
Gene : sig9
DDBJ      :sig9         putative RNA polymerase ECF-subfamily sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  126/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.13d.17.4
:175 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   49->166 3dm8A PDBj 1e-14 16.9 %
:RPS:SCOP  49->166 3dm8A1  d.17.4.20 * 1e-14 16.9 %
:HMM:SCOP  2->43 1or7A1 a.4.13.2 * 8e-05 35.7 %
:HMM:SCOP  46->168 1qjgA_ d.17.4.3 * 4.7e-15 24.8 %
:HMM:PFM   2->36 PF08281 * Sigma70_r4_2 7.4e-11 42.9 35/54  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68519.1 GT:GENE sig9 GT:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(962573..963100) GB:FROM 962573 GB:TO 963100 GB:DIRECTION - GB:GENE sig9 GB:PRODUCT putative RNA polymerase ECF-subfamily sigma factor GB:NOTE PF08281: Sigma-70, region 4 GB:PROTEIN_ID BAC68519.1 LENGTH 175 SQ:AASEQ MFVLREVFGFDYDDIAVAVGKSRVTVRQVAHRARKHVRARRKRFEPVGAAKAARITEPFMTAAATGDLEGLLSLLAPDVTWTADSGGKTTAARRPVVGAEKVAAVLMSIFRMGRLTDPRIKVVNCNNTPAMVIYSGDHPEGVFLVEIIDGRITSIYAVRNPDKLVAVAVPRRISR GT:EXON 1|1-175:0| SEG 26->43|vrqvahrarkhvrarrkr| RP:PDB:NREP 1 RP:PDB:REP 49->166|3dm8A|1e-14|16.9|118/135| HM:PFM:NREP 1 HM:PFM:REP 2->36|PF08281|7.4e-11|42.9|35/54|Sigma70_r4_2| RP:SCP:NREP 1 RP:SCP:REP 49->166|3dm8A1|1e-14|16.9|118/135|d.17.4.20| HM:SCP:REP 2->43|1or7A1|8e-05|35.7|42/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 46->168|1qjgA_|4.7e-15|24.8|117/125|d.17.4.3|1/1|NTF2-like| OP:NHOMO 166 OP:NHOMOORG 128 OP:PATTERN -------------------------------------------------------------------- --1-5---------31111-11--221111--22224-12-11-14-1------------221-112453------------1----------------------1---1----------------------------------1-1-------------------1---------------------------111111-1-111111-111--111-------------12--------------------------------------------------------------------------------------------------------------------------------------------1--111------------1-1--------------1-11--12---11-------1---111-------1-11-1--------------1-----------------------------------1--111-122221-1111111111111121--1-1--------111---------------------------------------------------11-111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11----------------11---------------------------------------------------1- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 127 STR:RPRED 72.6 SQ:SECSTR ###########################################TTHHHccHHHHHHHHHHHHHHHcccHHHHHHEEEEEEEEEEccTTTcTTcEEEEcHHHHHHHHHHHHHHEEEEEEEEEEEEEcccEEEEEEEEEETEEEEEEEEETTEEEEEEEEEcHHHHHHccHH##### DISOP:02AL 36-49, 171-175| PSIPRED cEEEEHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHccccEEEEEcccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEcccEEEEEEEccEEEEEEEEEEEccEEEEEEEEEcHHHHccccccccccc //