[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : wapA
DDBJ      :wapA         putative cell wall-associated protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  211/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.42.1
:820 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   108->233 3h8tA PDBj 9e-05 29.1 %
:RPS:PDB   16->207 3ckaA PDBj 9e-04 10.4 %
:RPS:PDB   258->566 3ckaA PDBj 9e-12 8.9 %
:RPS:SCOP  601->729 1c3pA  c.42.1.2 * 2e-04 18.0 %
:HMM:PFM   16->51 PF05593 * RHS_repeat 2.8e-10 41.7 36/38  
:HMM:PFM   45->71 PF05593 * RHS_repeat 8.4e-07 48.1 27/38  
:HMM:PFM   97->123 PF05593 * RHS_repeat 0.00026 33.3 27/38  
:HMM:PFM   193->220 PF05593 * RHS_repeat 0.00046 32.0 25/38  
:HMM:PFM   249->266 PF05593 * RHS_repeat 0.00024 50.0 18/38  
:HMM:PFM   282->314 PF05593 * RHS_repeat 8.3e-08 54.5 33/38  
:HMM:PFM   324->354 PF05593 * RHS_repeat 8.5e-05 44.8 29/38  
:HMM:PFM   385->422 PF05593 * RHS_repeat 3.3e-08 39.5 38/38  
:HMM:PFM   468->486 PF05593 * RHS_repeat 3.5e-05 66.7 18/38  
:BLT:SWISS 193->741 WAPA_BACSU 3e-32 29.2 %
:TM
:REPEAT 3|16->89|112->187|261->345
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68154.1 GT:GENE wapA GT:PRODUCT putative cell wall-associated protein GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION complement(598312..600774) GB:FROM 598312 GB:TO 600774 GB:DIRECTION - GB:GENE wapA GB:PRODUCT putative cell wall-associated protein GB:NOTE PF05593: RHS Repeat GB:PROTEIN_ID BAC68154.1 LENGTH 820 SQ:AASEQ MAGQGQHRPHRRLPPDANGNLASTTDTEGKTTVFRYDAWGRVDKITTAEGRVTVFTYDDANRVTSMLRGTGFNSDGHTGPTWTYAYTSDSVTAAGTTTATDPETHATKYQHDSDGQVSDVTDAMGHKRSTKFDANHSIDTSTDAMGSGTTPGNVTDYGFNTRNNLETITQPTGGKTVNHWQTIAGADVPKDSTNPDGEKTDFTYDAVGNTMSVAQTGTGGGNVSYTYNPASPTCGGFAGQRCTEKTKMTAAKTVTTTFHYDSAGNLDTVTPPAPLAKITYTYDALGRTKTVTDARGVTVTYTYDNRDRTRIVDTTNKARVEYWYDGDGNLTQRTDSTGTIKYDFDPLQRETIRTLQDGSQTLLAYTPSGNVDYYQDPAGTVDYTWNEVNKLAELKDPAGRVTTYKYNNNDVRTTTTYPGGTVQKVDPDNSSRPKTIKTTSPKGTPVDLAYSYGYGTSGTTEGSKIRSSTDNVTGLKTTYTYDGAGRFSYAEEKKGTTLNSSWLYCYDLAGNLTSQGTAAGCPGATTYTVNDAQQLTAKNGSTTNWSYDKIGNETAGASTPEGTRTAEKWTDHSQLTSLTVGGKTYTGQYGSTDQSERIRLGDTYFHNGPIGLAGTSTAGVDTGFNREPGGTLNSMTTGGKAYCYLTDALGSVIALTDETGAKVNTYAYSPRGVTRASTSEKNPQPYRFAGGYQDVTGLYHYGARYYDPNIGRFNSPDPSGQEENPYLYAEGDPVNRIDPNGLFSFSDALDTGSDIFGVVTGCLAGVTAAAETGSIAYAAAVGGVVGAGVGSAVGVGLAVVGSCALGGAAGFYGAEILTYG GT:EXON 1|1-820:0| BL:SWS:NREP 1 BL:SWS:REP 193->741|WAPA_BACSU|3e-32|29.2|511/2334| TM:NTM 1 TM:REGION 784->806| NREPEAT 1 REPEAT 3|16->89|112->187|261->345| SEG 92->107|taagtttatdpethat| SEG 243->257|tektkmtaaktvttt| SEG 450->463|ysygygtsgttegs| SEG 778->810|aaavggvvgagvgsavgvglavvgscalggaag| BL:PDB:NREP 1 BL:PDB:REP 108->233|3h8tA|9e-05|29.1|117/182| RP:PDB:NREP 2 RP:PDB:REP 16->207|3ckaA|9e-04|10.4|167/315| RP:PDB:REP 258->566|3ckaA|9e-12|8.9|280/315| HM:PFM:NREP 9 HM:PFM:REP 16->51|PF05593|2.8e-10|41.7|36/38|RHS_repeat| HM:PFM:REP 45->71|PF05593|8.4e-07|48.1|27/38|RHS_repeat| HM:PFM:REP 97->123|PF05593|0.00026|33.3|27/38|RHS_repeat| HM:PFM:REP 193->220|PF05593|0.00046|32.0|25/38|RHS_repeat| HM:PFM:REP 249->266|PF05593|0.00024|50.0|18/38|RHS_repeat| HM:PFM:REP 282->314|PF05593|8.3e-08|54.5|33/38|RHS_repeat| HM:PFM:REP 324->354|PF05593|8.5e-05|44.8|29/38|RHS_repeat| HM:PFM:REP 385->422|PF05593|3.3e-08|39.5|38/38|RHS_repeat| HM:PFM:REP 468->486|PF05593|3.5e-05|66.7|18/38|RHS_repeat| RP:SCP:NREP 1 RP:SCP:REP 601->729|1c3pA|2e-04|18.0|122/372|c.42.1.2| OP:NHOMO 559 OP:NHOMOORG 227 OP:PATTERN --------------------------------------------------21---------------- -11-7---------------------------------1----1-----11---2--1---3-343-345------------------3-1--1-1----2----1------------------1-----------1---21114-----1---------------1---1---------------------5-11111-4---213-3----11----2-2---111-214-------------------------------------------------------------------------------------------2---1-------1------------6---------71--1------1------1-------------------------------1---2------1--------1--------1----1-11--------------------------------------------1--1-----------42221-411111-1-2632-4313--21----B--5--3---21-------3--------112---18-5------2-----6-111311---21E-3------------------------1----1-3--------11151---2----1--3--------------1-----465-4---63-6637---6-53--324431---1-212--212---1111-111-323---4---32323313212---------------G------1------------1---1----A----7-52-1-22-329-------------2-----11-21323222265A------------32-----------------------------------------------11 ------1--------------1-1------------1---------1-1211----------------------------------------------------------------------------------------------------------2------2--45------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 504 STR:RPRED 61.5 SQ:SECSTR ###############cTTccEEEEETEEEEEEEccccccEEEEEEcTTccEEEEEEcTTccEEEEEEE#####EEEccccEEEEEcTTcccEEEEEEEETTccEEEEEEcTTccEEEEEEEcTTccEEEEEEcTTccEEEEEEEcTTccEEEEEEcTTccEEEEEEEEEEEEcTTccEEEEEEcTTccEEEEEEEcTTccEEEEEcccTTccEEEEEEccccEEEEEEccccEE#######################EcTTccEEEEEEETTEEEEEEEEcTTccEEEEEEcTTccEEEEEEEcTTcccEEEEEEEETTccEEEEEEcTTcccccEEEEEEEEEcccccEEEEEEcTTccEEEEEEEcTTccEEccTTcEEEEcTTccEEEEEEEcTTccEEEEEEcTTccEEEEEEEcTTccEEEEEcccTTccEEEEEEccc##########cEEEEEEcccEEEEEEEETTEEEEEEEETTccEEEEEEEccccTTTcEEEEEETTTTEEEEEETT#########EEEEEEEEcTTccEEEEEccTTccccccccEEEccHHH############################################################################################################################################################################################################################################################## DISOP:02AL 5-6| PSIPRED cccccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEEccccccccccccEEEEEEEccccccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEEcccccEEEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccEEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEcccccccEEEEEccccccEEEEccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccEEEEEEEccccccEEEEcccEEEcccEEEEEEccccEEEEEEEcccccEEEEEEccEEEEEEEcccccEEEEEcccccEEEEEEEccccHHccccccccccccccccEEEccccEEEEccccccHHHccEEEcccccccccccEEEcccccccccccccccccHHHHccccEEEcccccEEEEEcccccccEEEcccccEEEEEEEEEcccccEEEEEEEEEEHHHHHHHHHHHHcc //