[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Streptomyces avermitilis MA-4680 (save0)
Gene : yerD1
DDBJ      :yerD1        putative glutamate synthase
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  656/915 : Eukaryota  131/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:527 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   160->483 2vdcA PDBj 3e-34 33.4 %
:RPS:PDB   206->469 2droA PDBj 1e-18 11.5 %
:RPS:SCOP  156->503 1ea0A2  c.1.4.1 * 1e-56 29.1 %
:HMM:SCOP  16->520 1llwA2 c.1.4.1 * 1.8e-126 37.9 %
:RPS:PFM   156->470 PF01645 * Glu_synthase 1e-52 40.9 %
:HMM:PFM   155->470 PF01645 * Glu_synthase 7.7e-84 37.1 299/368  
:BLT:SWISS 157->477 GLUS_METJA 1e-39 33.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAC68664.1 GT:GENE yerD1 GT:PRODUCT putative glutamate synthase GT:DATABASE GIB00135CH01 GT:ORG save0 GB:ACCESSION GIB00135CH01 GB:LOCATION 1213312..1214895 GB:FROM 1213312 GB:TO 1214895 GB:DIRECTION + GB:GENE yerD1 GB:PRODUCT putative glutamate synthase GB:NOTE PF01645: Conserved region in glutamate synthase putative glutamate synthase(ferredoxin) GB:PROTEIN_ID BAC68664.1 LENGTH 527 SQ:AASEQ MTRIGLVVLALAAALAAGAAAGSISPWWWFAAVPLTLLGLLGTWDLLQRRHSVLRNYPVLGHARFLLERIRPELQQYFVERNFDGRPFDRDVRSIVYERAKGTDAEQPYGTEQDVYQPGYEFLIPSMAPRPVPQTPPRVRIGGPDCSRPYDMALLNVSAMSFGSLSSNAILALNGGAAAGGFAHDTGEGGLSEYHLRPGGDLVWEIGTGYFGCRTQDGEFDPKEFADKAAHEHVKCVSLKLSQGAKPGIGGVLPGPKVNSEIARVRDVPEGRTVISPPYHREFSTPRELVLFIARMRELSGGKPTGFKLCPGSRRQFLAVCKAMLEEGTAPDFIIVDGAEGGTGAAPLEFADHVGTPLTEGLLTVHNALVGAGLRDRIRIGASGKIATGTDLVKRLLQGADYGNAARAMMFAVGCIQAQRCHTNTCPTGVTTQDPRRARALDVGDKTLRVQRLQEATVASALQIMASMGVTDPSQLRPHMLHRRIDPYTERSYDELYEWLRPGQLLAEPPAAWAADWHAADPDRFTV GT:EXON 1|1-527:0| BL:SWS:NREP 1 BL:SWS:REP 157->477|GLUS_METJA|1e-39|33.9|304/510| TM:NTM 2 TM:REGION 4->23| TM:REGION 29->48| SEG 5->22|glvvlalaaalaagaaag| SEG 35->47|ltllgllgtwdll| SEG 129->140|prpvpqtpprvr| SEG 168->183|nailalnggaaaggfa| SEG 507->523|aeppaawaadwhaadpd| BL:PDB:NREP 1 BL:PDB:REP 160->483|2vdcA|3e-34|33.4|305/1472| RP:PDB:NREP 1 RP:PDB:REP 206->469|2droA|1e-18|11.5|234/376| RP:PFM:NREP 1 RP:PFM:REP 156->470|PF01645|1e-52|40.9|298/342|Glu_synthase| HM:PFM:NREP 1 HM:PFM:REP 155->470|PF01645|7.7e-84|37.1|299/368|Glu_synthase| GO:PFM:NREP 2 GO:PFM GO:0006537|"GO:glutamate biosynthetic process"|PF01645|IPR002932| GO:PFM GO:0015930|"GO:glutamate synthase activity"|PF01645|IPR002932| RP:SCP:NREP 1 RP:SCP:REP 156->503|1ea0A2|1e-56|29.1|326/763|c.1.4.1| HM:SCP:REP 16->520|1llwA2|1.8e-126|37.9|491/0|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 1240 OP:NHOMOORG 834 OP:PATTERN ---1--1111111111111111111--111112131112111112-21111111-1------------ 11113--111111111111-13112311111234442365122211-11111121221--112111231211111111----211111--1111-----1-213222212---------------2112231123211111111112121112111111111112111111111111111111111111--122222222221222222111122222211-31211111142-2222222222222222122----11---------11----1-111--------11----------------------------------11-11-------1-1-111------1--1111122111-2-121112---2111111-----142332122223211111111111-22122122112-1111221111112321223111113231111111121111211-----------------------------42131122222222222222222223222222222112112222221112112212221-1111-------11211111212221112222-1211222321111111-1--1-11111----------2111311111222422222233312322223233223---3222------111111-111111-111-1111111111111111111111111111111--1---11111121111111--111111111111---111111111112222-----------1---222421312222222232223343312221-111111-21112222222332222111111111111111-221222--------------------------------------1--1-111111 11----1-1---11111111111-1111111111111111-111111111111111111111111111-11-11111-1111111111-12111111111121212-12-2---------------------------------------------------122112113112-1222V1111262151442242112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 400 STR:RPRED 75.9 SQ:SECSTR ######################################################################################HHHHHHHTTccHHHHccTTcHTcHHHHHHHHGGGGEEEccccccccccccccEEETTEEEcccEEEc#EEEcccTTTTccHHHHHHHHHTTccEEHHHHEEcTTccHHHHccEEEEcTTHHHHHHcccccTTccHHHHHHHHHHHHTccccTHHHTTccccccccccTTTccccccTTccccHTTccEEEEcccGGGccHHHHHHHHHHccGHcTTGGHHHHHHHHHHHHHHHHHHccTTTccccccccTTcccccTTccccccGGGHHHHHHHHHHHHcccHHHHHHHHHHHHHHHTccGGGcEEEcTTccEEEEcccHHHHHHHHHHHGGGcTTEEEcccTTHHHHHHHHHTcccccccccTTHHHHHHHHHHHHHHHTTcEEHHHHHHHHHHHHHTcc######################################## DISOP:02AL 1-2, 521-525| PSIPRED ccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHccccccccccccccHHHcccccccccccccccccccccHHHccHHHHHHHHHHHHHccccEEcccccccHHHHcccccEEEEEEccccccccccccccHHHHHHHHHHcccEEEEEEEEcccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHccccHHHHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccEEEEcccHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHccccccc //