[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF65919.1
DDBJ      :             putative autotransporter/pertactin
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  87/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.80.1f.4.5
:868 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   599->861 2qomB PDBj 3e-07 27.0 %
:RPS:PDB   664->809 3btpA PDBj 4e-08 8.7 %
:RPS:SCOP  587->868 1uynX  f.4.5.1 * 6e-22 16.7 %
:HMM:SCOP  58->570 1dabA_ b.80.1.7 * 1e-36 25.8 %
:HMM:SCOP  571->868 1uynX_ f.4.5.1 * 2.9e-52 29.4 %
:RPS:PFM   606->852 PF03797 * Autotransporter 7e-15 30.9 %
:HMM:PFM   606->848 PF03797 * Autotransporter 1.2e-43 24.9 237/265  
:HMM:PFM   347->471 PF10162 * G8 0.0003 27.4 95/125  
:BLT:SWISS 5->868 YAIT_SALTY 0.0 78.0 %
:REPEAT 2|69->187|247->357
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF65919.1 GT:GENE ACF65919.1 GT:PRODUCT putative autotransporter/pertactin GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 472630..475236 GB:FROM 472630 GB:TO 475236 GB:DIRECTION + GB:PRODUCT putative autotransporter/pertactin GB:NOTE identified by match to protein family HMM PF03797; match to protein family HMM TIGR01414 GB:PROTEIN_ID ACF65919.1 GB:DB_XREF GI:194405700 LENGTH 868 SQ:AASEQ MWDDTAYVDHDWDDGDTFTLNIANSTIDDDYEYFYFTDDYNNADGKVTTEDWRTSELASLGTAVTLDVESNINITNNSRVAGITLSQGDTYDATYATGGDSAYVHTWDNTIVVDNSTVTSGAVTPLEGSGWFGNSSEPSDYSGNAVYDTTTGTWYHNPNDTALSFSDDPDSYYSMKNNVTFTNGSTLMGDVVFTSNFNNADDANADSNGDGVISASDGFSPIGYDTNNDGVEDTNGGWSHDNDNVDELNLKLDNGSKWVGDAYFSYEYIAPADMYDLEDGTNSLEPSSTVDKWGNVVDDKTFQSGIFTVALDNGSEWDTVNASNVDTLTVNNGSQVNVADSSSLIADTITLTNGSTMNLSSYGEVDTDHLTVDSYSKVDLTNETAYLYANTITVSNGGEFSIGAGEFDADSFGTDTLELTNAGVFNINNSDYVLDADLVNGHTNTTDTSNATYGYGVIAMTSDGHLTVNGNGDYYNGDNTADTTYSANGEADNSYTDNVVAATGNYKVRIDNATGAGSVADYKGNELIRVNDVNTDATFSAANKADLGAYTYQAKQEGNTVVLEQMELTDYANMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTINYDQDVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANNIFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYDDSNNDADVNGDSIDNGVEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANVGVKYTW GT:EXON 1|1-868:0| BL:SWS:NREP 1 BL:SWS:REP 5->868|YAIT_SALTY|0.0|78.0|804/978| NREPEAT 1 REPEAT 2|69->187|247->357| SEG 28->40|dddyeyfyftddy| SEG 198->206|nnaddanad| SEG 469->479|ngngdyyngdn| SEG 726->740|glklgydlklgdagy| BL:PDB:NREP 1 BL:PDB:REP 599->861|2qomB|3e-07|27.0|248/269| RP:PDB:NREP 1 RP:PDB:REP 664->809|3btpA|4e-08|8.7|138/386| RP:PFM:NREP 1 RP:PFM:REP 606->852|PF03797|7e-15|30.9|243/263|Autotransporter| HM:PFM:NREP 2 HM:PFM:REP 606->848|PF03797|1.2e-43|24.9|237/265|Autotransporter| HM:PFM:REP 347->471|PF10162|0.0003|27.4|95/125|G8| RP:SCP:NREP 1 RP:SCP:REP 587->868|1uynX|6e-22|16.7|264/279|f.4.5.1| HM:SCP:REP 58->570|1dabA_|1e-36|25.8|453/539|b.80.1.7|1/1|Pectin lyase-like| HM:SCP:REP 571->868|1uynX_|2.9e-52|29.4|286/0|f.4.5.1|1/1|Autotransporter| OP:NHOMO 179 OP:NHOMOORG 87 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------23313-----------------------1--------------------------------------------------------------------------------------------994----------------------------------------------------1--------------------------------------------------------------------------------------------------------------------11-----1432422214-33132-1121223221221--------121111111111111112242111--133353333443-------------------------------------------------1111-1111-212------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 259 STR:RPRED 29.8 SQ:SECSTR ######################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################HHHTcccccEEEEEEEEEEEEEccTT###cEEEEEEEEEEEEEEEE#ccEEEEEEEEEEEEEEEEccccEEEEHHHHHHHcHHHHHHHTTccGGGEEEEcTTccEEEcHcccEHHHHHHcHHHHHHHHHHHTccGGGGGcccccccccEEEEcccEEEcGcGGccTTTcccTTEEEEEEcTTccEEEEEEccEEHHHHHHTTccccHHHHHccTTccccccccEEEEEEEEEEEEETTTEEEcEcEEEEEccccEEEEEEEEc####### DISOP:02AL 1-2,592-604,621-622,625-625,663-669| PSIPRED ccccccccccccccccEEEEEEccccccccEEEEEEccccccccccccccEEEEEEEEcccEEEEEEEEEEEEEEccccEEEEEEEcccccccEEEEccccccEEEEccEEEEcccEEEEcccEEEcccEEEEcccccccccccccccccEEEEEEccccEEEEEEcccccEEEEEccEEEccccEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEccccEEcccccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEccccccccccEEccccEEEcccEEcccEEEEEEEccEEEEEEcccEEEEEEEcccEEEEEcccEEEEEcEEEEEccEEEEEEcccEEEcEEEEEEcccEEEEEEccccccccEEEEcccEEEEEEccEEEcccEEEEEEEEccccEEEEEccccEEEEEEEEcEEEEEEccEEEEEEEEEEEEcccEEEEEEcccccccccccccEEEEEccccccEEEEEEEccccEEEEEEccccccccccccccEEEEEEcccccEEEEEEcccccccEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEcccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEcccccEEEEEEcccEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEcccccccccEEEEEccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEccccccEEEccEEEEEcccccEEEEEEEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEEc //