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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF66420.1
DDBJ      :             L-fucose operon activator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  509/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.124.1
:236 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   5->58 2acjC PDBj 4e-07 25.9 %
:RPS:PDB   38->232 3dlxB PDBj 1e-23 13.0 %
:RPS:SCOP  5->55 1lvaA4  a.4.5.35 * 9e-10 11.8 %
:RPS:SCOP  72->234 2ahuA2  c.124.1.2 * 4e-21 8.6 %
:HMM:SCOP  1->58 1stzA1 a.4.5.51 * 3.2e-13 41.4 %
:HMM:SCOP  74->236 1lk5A1 c.124.1.4 * 7.5e-28 22.4 %
:RPS:PFM   5->55 PF08220 * HTH_DeoR 2e-08 49.0 %
:RPS:PFM   80->232 PF00455 * DeoR 2e-16 34.0 %
:HMM:PFM   78->232 PF00455 * DeoR 6.7e-52 36.8 155/157  
:HMM:PFM   5->60 PF08220 * HTH_DeoR 1.7e-21 44.6 56/57  
:BLT:SWISS 1->235 FUCR_SHIFL e-121 88.9 %
:PROS 5->39|PS00894|HTH_DEOR_1

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66420.1 GT:GENE ACF66420.1 GT:PRODUCT L-fucose operon activator GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 3114635..3115345 GB:FROM 3114635 GB:TO 3115345 GB:DIRECTION + GB:PRODUCT L-fucose operon activator GB:NOTE identified by match to protein family HMM PF00392; match to protein family HMM PF00455; match to protein family HMM PF08220; match to protein family HMM PF08279 GB:PROTEIN_ID ACF66420.1 GB:DB_XREF GI:194406201 LENGTH 236 SQ:AASEQ MKAARQQAIVDLLINHKSLTTEALATRLNVSKETIRRDLSELQTQGKVLRNHGRAKYIHRENQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMTIALDASSTCWYLARQLPDIPIQVFTNSHPICQELGKRERIALISSGGQLERKYGCYVNPSLISQLKSLDIDLFIFSCEGIDGGGDLWDSNAINADFKSILLRRASQSLLLIDKSKFNRSGEARIGHLDDVTHIVSDAPQS GT:EXON 1|1-236:0| BL:SWS:NREP 1 BL:SWS:REP 1->235|FUCR_SHIFL|e-121|88.9|235/243| PROS 5->39|PS00894|HTH_DEOR_1|PDOC00696| RP:PDB:NREP 2 RP:PDB:REP 5->58|2acjC|4e-07|25.9|54/66| RP:PDB:REP 38->232|3dlxB|1e-23|13.0|192/465| RP:PFM:NREP 2 RP:PFM:REP 5->55|PF08220|2e-08|49.0|51/56|HTH_DeoR| RP:PFM:REP 80->232|PF00455|2e-16|34.0|153/157|DeoR| HM:PFM:NREP 2 HM:PFM:REP 78->232|PF00455|6.7e-52|36.8|155/157|DeoR| HM:PFM:REP 5->60|PF08220|1.7e-21|44.6|56/57|HTH_DeoR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08220|IPR001034| GO:PFM GO:0005622|"GO:intracellular"|PF08220|IPR001034| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08220|IPR001034| RP:SCP:NREP 2 RP:SCP:REP 5->55|1lvaA4|9e-10|11.8|51/60|a.4.5.35| RP:SCP:REP 72->234|2ahuA2|4e-21|8.6|163/273|c.124.1.2| HM:SCP:REP 1->58|1stzA1|3.2e-13|41.4|58/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 74->236|1lk5A1|7.5e-28|22.4|143/150|c.124.1.4|1/1|NagB/RpiA/CoA transferase-like| OP:NHOMO 1817 OP:NHOMOORG 514 OP:PATTERN ------------------------2--1---------------------------------------- 22--8-11223----------3---3------111111221--161--112-6341-3--21353485433-1111-12---1--------1--------13--13-5-A--------------------------22211----------------------------1-------------311--22-3141111121212112217544242231111323666666491222222222222224322342-159--21133--771411--34333422224444444444444444444444444444321113335411663323343534-2--13312111-1111----1--1--42226212--12------------2----2-1144444444446---1--21219--9665455876541----32-4134332111111113112---2-------------------------------1---111112334432333344553333123232232--1111-1111-1325-------211111111----1---2----1--1-----------11-----1-----------------------------3161---1-122-------111---------------------7555552A97BABBBAA-9BAA9A9A9A9CA9AABA5CAC45442B8CBCBCBBABBABBB8877AA882-655555445555---------------116232525123224773----------1-22122422122221455----------333644444323562211111----------2---------------------1---1-1------1--------4---12111--- -------------1------------------------------------------------------------------------------------------------------------------------------------------------1----1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 236 STR:RPRED 100.0 SQ:SECSTR ccHHHHHHHHHHHHHGGGccccHHHHTHHHHHcTTcccTTcccGGGccccGGGccEEEEccccccccccccccccccHHHHHHHHHHGGGccTTEEEEEcTTHHHHHGGGccTTccEEEEETTTEEEEcccccGcccTTcccccEEEEEEEccHHHHHHHHHTTcccEEEEcccEEETTccEEccccTTcTTHHHHTccTTcEEEEEGEEcEEccccccccccccccEEEccTccE DISOP:02AL 1-3,236-237| PSIPRED ccHHHHHHHHHHHHHcccEEHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEccHHHHHHHHHccccEEEEEccEEEcccccEEcHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcHHHccEEEEccccc //