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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF66891.1
DDBJ      :             transcriptional regulator, TetR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  118/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:224 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->220 1t33A PDBj e-126 100.0 %
:RPS:PDB   4->221 3e7qB PDBj 3e-13 16.0 %
:RPS:SCOP  1->88 1t33A1  a.4.1.9 * 9e-36 100.0 %
:RPS:SCOP  89->220 1t33A2  a.121.1.1 * 6e-36 100.0 %
:HMM:SCOP  1->88 1t33A1 a.4.1.9 * 5e-17 29.5 %
:HMM:SCOP  89->220 1t33A2 a.121.1.1 * 4.9e-39 35.6 %
:RPS:PFM   17->58 PF00440 * TetR_N 2e-04 50.0 %
:RPS:PFM   109->218 PF09209 * DUF1956 2e-27 53.6 %
:HMM:PFM   96->218 PF09209 * DUF1956 1.5e-38 34.1 123/125  
:HMM:PFM   17->62 PF00440 * TetR_N 7e-16 45.7 46/47  
:BLT:SWISS 1->223 YBIH_SHIFL 5e-95 74.9 %
:PROS 29->58|PS01081|HTH_TETR_1

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66891.1 GT:GENE ACF66891.1 GT:PRODUCT transcriptional regulator, TetR family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(934120..934794) GB:FROM 934120 GB:TO 934794 GB:DIRECTION - GB:PRODUCT transcriptional regulator, TetR family GB:NOTE identified by match to protein family HMM PF00440; match to protein family HMM PF09209 GB:PROTEIN_ID ACF66891.1 GB:DB_XREF GI:194406672 LENGTH 224 SQ:AASEQ MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLTQRSLD GT:EXON 1|1-224:0| BL:SWS:NREP 1 BL:SWS:REP 1->223|YBIH_SHIFL|5e-95|74.9|223/223| PROS 29->58|PS01081|HTH_TETR_1|PDOC00830| BL:PDB:NREP 1 BL:PDB:REP 1->220|1t33A|e-126|100.0|220/220| RP:PDB:NREP 1 RP:PDB:REP 4->221|3e7qB|3e-13|16.0|200/210| RP:PFM:NREP 2 RP:PFM:REP 17->58|PF00440|2e-04|50.0|42/47|TetR_N| RP:PFM:REP 109->218|PF09209|2e-27|53.6|110/125|DUF1956| HM:PFM:NREP 2 HM:PFM:REP 96->218|PF09209|1.5e-38|34.1|123/125|DUF1956| HM:PFM:REP 17->62|PF00440|7e-16|45.7|46/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 1->88|1t33A1|9e-36|100.0|88/88|a.4.1.9| RP:SCP:REP 89->220|1t33A2|6e-36|100.0|132/132|a.121.1.1| HM:SCP:REP 1->88|1t33A1|5e-17|29.5|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 89->220|1t33A2|4.9e-39|35.6|132/132|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 124 OP:NHOMOORG 120 OP:PATTERN -------------------------------------------------------------------- --------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1121-11111111111---------2-------11111111---1---1---------------------------------------------------------------1111111----11-1------1-----1-----------------------------------------1-----12--------------------1-----------------------------1----------------------------------------11--11-1111111111-1111111111111111111111--112111111111111111111111111--1--1111--111-------------1-------------------------------------------------------------------------1----------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------1------------------------------------------------1--------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 98.7 SQ:SECSTR cccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccTTHHHHTccccHHHHHHHHHHHHHHHHTcHHHHcGGGHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHTcHHHHHTccHHHHHHcccHHHHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHHTGGGG### DISOP:02AL 1-17,222-225| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccc //