[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF67133.1
DDBJ      :             outer membrane usher protein SfmD
Swiss-Prot:FIMD_SALTY   RecName: Full=Outer membrane usher protein fimD;Flags: Precursor;

Homologs  Archaea  0/68 : Bacteria  164/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
b.167.1b.21.1f.4.6
:870 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->163 3bwuD PDBj 8e-25 43.3 %
:BLT:PDB   182->614 2vqiB PDBj 3e-42 34.6 %
:RPS:PDB   39->163 3bwuD PDBj 1e-37 42.5 %
:RPS:PDB   237->546 3bqjA PDBj 4e-66 12.1 %
:RPS:SCOP  37->166 1ze3D1  b.167.1.1 * 3e-35 41.4 %
:RPS:SCOP  138->321 1h7zA  b.21.1.1 * 2e-36 12.8 %
:RPS:SCOP  304->572 1tlwA  f.4.6.1 * 1e-21 9.5 %
:HMM:SCOP  37->166 1ze3D1 b.167.1.1 * 2.6e-36 44.8 %
:RPS:PFM   40->846 PF00577 * Usher 0.0 54.1 %
:HMM:PFM   39->849 PF00577 * Usher 8.6e-306 51.7 768/783  
:BLT:SWISS 1->870 FIMD_SALTY 0.0 96.6 %
:PROS 314->324|PS01151|FIMBRIAL_USHER
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67133.1 GT:GENE ACF67133.1 GT:PRODUCT outer membrane usher protein SfmD GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 654479..657091 GB:FROM 654479 GB:TO 657091 GB:DIRECTION + GB:PRODUCT outer membrane usher protein SfmD GB:NOTE identified by match to protein family HMM PF00577 GB:PROTEIN_ID ACF67133.1 GB:DB_XREF GI:194406914 LENGTH 870 SQ:AASEQ MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEYDSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGWQGISYSLSWSWNESVGISGADRILAFNMSVPFSVLTGRRYARDTLLDRTYATFNANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSTNGYSGSASASWQATYGTLGVGYNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQAITIASATCIRPSS GT:EXON 1|1-870:0| SW:ID FIMD_SALTY SW:DE RecName: Full=Outer membrane usher protein fimD;Flags: Precursor; SW:GN Name=fimD; OrderedLocusNames=STM0546; SW:KW Cell membrane; Cell outer membrane; Complete proteome; Disulfide bond;Fimbrium biogenesis; Membrane; Signal; Transmembrane; Transport. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->870|FIMD_SALTY|0.0|96.6|870/870| GO:SWS:NREP 5 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0009279|"GO:cell outer membrane"|Cell outer membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 314->324|PS01151|FIMBRIAL_USHER|PDOC00886| SEG 15->29|vsplssvalsvlaal| BL:PDB:NREP 2 BL:PDB:REP 39->163|3bwuD|8e-25|43.3|120/121| BL:PDB:REP 182->614|2vqiB|3e-42|34.6|387/469| RP:PDB:NREP 2 RP:PDB:REP 39->163|3bwuD|1e-37|42.5|120/121| RP:PDB:REP 237->546|3bqjA|4e-66|12.1|282/297| RP:PFM:NREP 1 RP:PFM:REP 40->846|PF00577|0.0|54.1|761/771|Usher| HM:PFM:NREP 1 HM:PFM:REP 39->849|PF00577|8.6e-306|51.7|768/783|Usher| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00577|IPR000015| GO:PFM GO:0006810|"GO:transport"|PF00577|IPR000015| GO:PFM GO:0016020|"GO:membrane"|PF00577|IPR000015| RP:SCP:NREP 3 RP:SCP:REP 37->166|1ze3D1|3e-35|41.4|116/116|b.167.1.1| RP:SCP:REP 138->321|1h7zA|2e-36|12.8|172/191|b.21.1.1| RP:SCP:REP 304->572|1tlwA|1e-21|9.5|232/251|f.4.6.1| HM:SCP:REP 37->166|1ze3D1|2.6e-36|44.8|125/0|b.167.1.1|1/1|FimD N-terminal domain-like| OP:NHOMO 857 OP:NHOMOORG 166 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111372221532112221-5554322131214--221--1--211-1--------1-------------------------------------------------------------------------11-------------1----111----1---------------G7--25C8FGACAB899-98AF978C9CA7BB88AA6B992358FA44ABBCCCD98C6AA92457574--67988AA7B888-------------12---------1---1----22211-2--1--4444-314-2231-132-------------------11---211-1--1111111----------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 618 STR:RPRED 71.0 SQ:SECSTR ######################################cccGGGGTTcTTHHHHHHHHHTTcccccEEEEEEEEETTEEEEEEEEEEEEc##EEcccTTcEEEcccHHHHHHTTccGGGcTTGGGccTTccccHHHHcTTcEEEEETTTTEEEEEccGGGccccccccccTTcccccTTc#cEEEEEEEETccEEEEEEEEEEEEEEccccEEEEEEEEEEEEccccccEEEEEEEcccGGGcccccccccccEEEEEcccccccccTTccccTTcccccTTTTcEEEEEEcccccEEEEcccTTcccccTTccccccTTccccccEEEEEEEEEcTTTccEEEEEEEEEcccTTccTTTTEEEEcccccccccEEEEEEEEEEcccccccccTTccccTTTTTcccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHccccccccEEEEEEEETTTTEEEEEEEEETTEHTEEEEcccccccccccTcHHHHHHHHccEEEEEEEEEEEETTTcEEEEEEEEcTTcccccEEcEEEEEEEEEEccEEEEEEEEEEEccccEEEEEEEEEEEEETTEEEEEEEEETTEEEEEEEEEET#####GGTEEEEEEEE########EEEccccEEEEEEEEEEETTEEEEEEEEEETTcE###################################################################################################################################################################################################### DISOP:02AL 1-4,601-607,612-625,645-656,867-871| PSIPRED ccccccccccccEEEHHHHHHHHHHHHHHHccccccccEEcHHHHcccccccEEEEEEcccccccccEEEEEEEEccEEccEEEEEEEEcccccccccccEEEEccHHHHHHccccHHHccccccccccccccHHHHccccEEEEccccEEEEEEEcHHHHcccccccccHHHHcccccEEEEEEEEEEEEccccEEEEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEEEEEEEEEEcccccccEEEEEEEEccccccccEEEEEEEEEEccccccccccccccEEEEEEccccEEEEEEccEEEEEEEcccccEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEHHHHHccccccEEEEEEEEEEcccccccccEEEEEEEEccccccEEEEEEEEEcccEEEEEEEEHHccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHcccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEEEEEEccccccEEEEEEEEEEEEccEEEEEEEEEEEEccccccccEEEEEEEEEcccccccccccccccccEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEcccccccEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEcccEEEcccccccEEEEEcccccccEEccccEEEEccccEEEEccccccEEEEEEEcccccccccEEcccEEEEEEEcccEEEEEEEEEEEEEEEEEEccccccccEEEEEEEccccEEEEEEcccEEEEEccccccEEEEEEccccccEEEEEEcccccccccEEEEEEEEEEcccc //