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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF67274.1
DDBJ      :             regulatory protein SdiA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  106/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.6d.110.5
:240 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->171 2avxA PDBj 9e-57 56.7 %
:BLT:PDB   181->240 3cloC PDBj 2e-04 35.6 %
:RPS:PDB   1->127 2avxA PDBj 2e-07 65.4 %
:RPS:PDB   168->239 3cloA PDBj 2e-09 25.0 %
:RPS:SCOP  8->127 1h0mA2  d.110.5.1 * 3e-21 25.4 %
:RPS:SCOP  179->240 1h0mA1  a.4.6.2 * 3e-09 25.8 %
:HMM:SCOP  7->170 1l3lA2 d.110.5.1 * 4e-37 32.7 %
:HMM:SCOP  158->240 1p4wA_ a.4.6.2 * 1.9e-17 30.1 %
:RPS:PFM   23->127 PF03472 * Autoind_bind 3e-16 38.1 %
:RPS:PFM   178->234 PF00196 * GerE 3e-04 28.1 %
:HMM:PFM   23->159 PF03472 * Autoind_bind 3.7e-36 32.1 137/149  
:HMM:PFM   178->234 PF00196 * GerE 7.1e-25 40.4 57/58  
:BLT:SWISS 1->240 SDIA_ECOLI 3e-88 62.5 %
:PROS 194->221|PS00622|HTH_LUXR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67274.1 GT:GENE ACF67274.1 GT:PRODUCT regulatory protein SdiA GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2088006..2088728) GB:FROM 2088006 GB:TO 2088728 GB:DIRECTION - GB:PRODUCT regulatory protein SdiA GB:NOTE identified by match to protein family HMM PF00196; match to protein family HMM PF03472 GB:PROTEIN_ID ACF67274.1 GB:DB_XREF GI:194407055 LENGTH 240 SQ:AASEQ MQENDFFTWRRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYALCVRHPVPFTRPKISLRTTYPPAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 1->240|SDIA_ECOLI|3e-88|62.5|240/240| PROS 194->221|PS00622|HTH_LUXR_1|PDOC00542| SEG 128->145|ralgflsfsrsslrcssf| SEG 197->208|sseiaiilsise| BL:PDB:NREP 2 BL:PDB:REP 1->171|2avxA|9e-57|56.7|171/171| BL:PDB:REP 181->240|3cloC|2e-04|35.6|59/248| RP:PDB:NREP 2 RP:PDB:REP 1->127|2avxA|2e-07|65.4|127/171| RP:PDB:REP 168->239|3cloA|2e-09|25.0|72/249| RP:PFM:NREP 2 RP:PFM:REP 23->127|PF03472|3e-16|38.1|105/149|Autoind_bind| RP:PFM:REP 178->234|PF00196|3e-04|28.1|57/57|GerE| HM:PFM:NREP 2 HM:PFM:REP 23->159|PF03472|3.7e-36|32.1|137/149|Autoind_bind| HM:PFM:REP 178->234|PF00196|7.1e-25|40.4|57/58|GerE| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 2 RP:SCP:REP 8->127|1h0mA2|3e-21|25.4|114/165|d.110.5.1| RP:SCP:REP 179->240|1h0mA1|3e-09|25.8|62/65|a.4.6.2| HM:SCP:REP 7->170|1l3lA2|4e-37|32.7|159/0|d.110.5.1|1/1|Pheromone-binding domain of LuxR-like quorum-sensing transcription factors| HM:SCP:REP 158->240|1p4wA_|1.9e-17|30.1|83/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 130 OP:NHOMOORG 107 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-11111111111----------1--------1-----------------------------1----------------------------------------------3112233222211--22221212--------12---------1--------------------------------------------------------------------------------1111-----------------------------------------11---11111111-111-1111111111111-11--1111-----1111111111111111-11-1111-----------------------------------------------------------22221----1111----------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 240 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHTTTcccEEEEEEEccTTcccEEEEEEcccHHHHHHHHHTTGGGTcGGGcTTTcTTcEEEccTTTTcccHHHHHHHHHHTccEEEEEEEccTTccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHEEcccHHHHTTcccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccHHHHHHHHHHTccT DISOP:02AL 1-3,166-178| PSIPRED cccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEcccccccccccEEEEEcccHHHHHHHHHcccccccHHHHHHHHccccccccHHHcHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccc //