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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF67546.1
DDBJ      :             type III secretion apparatus protein, YscD/HrpQ family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  39/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.26.1c.36.1
:399 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   10->94 2affA PDBj 6e-05 21.2 %
:RPS:SCOP  6->94 2fezA3  b.26.1.2 * 3e-06 15.7 %
:RPS:SCOP  170->364 1l8aA1  c.36.1.10 * 3e-04 13.0 %
:BLT:SWISS 164->385 YSCD_YEREN 9e-09 27.2 %
:TM

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67546.1 GT:GENE ACF67546.1 GT:PRODUCT type III secretion apparatus protein, YscD/HrpQ family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1487403..1488602 GB:FROM 1487403 GB:TO 1488602 GB:DIRECTION + GB:PRODUCT type III secretion apparatus protein, YscD/HrpQ family GB:NOTE identified by match to protein family HMM TIGR02500 GB:PROTEIN_ID ACF67546.1 GB:DB_XREF GI:194407327 LENGTH 399 SQ:AASEQ MVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICIPLAINEKIILREQADSLFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQDCELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNIHYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLIREVQDVLIKMGYPHAEVSSEGPGSVLIHDDIQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDIISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPALSLIYQDIAPSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHHDTLINYPLDFK GT:EXON 1|1-399:0| BL:SWS:NREP 1 BL:SWS:REP 164->385|YSCD_YEREN|9e-09|27.2|217/100| TM:NTM 1 TM:REGION 114->136| RP:PDB:NREP 1 RP:PDB:REP 10->94|2affA|6e-05|21.2|85/98| RP:SCP:NREP 2 RP:SCP:REP 6->94|2fezA3|3e-06|15.7|89/99|b.26.1.2| RP:SCP:REP 170->364|1l8aA1|3e-04|13.0|192/402|c.36.1.10| OP:NHOMO 39 OP:NHOMOORG 39 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------1-1--------------------------------1---11--------1----1----1----------------1111111111111111--------1--11111111111--1-------------------------------------------------------------------------------1---------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 91 STR:RPRED 22.8 SQ:SECSTR ###TccEEEEEEcTTccEEEEEEccccEEEEEcTTccEEcccTTcccEEEccccEEEEEcccccccEETTEEccccEEEcTTcEEEETTEEEEE################################################################################################################################################################################################################################################################################################################# DISOP:02AL 1-3| PSIPRED ccccccEEEEEEEcccccccEEEccccEEEEccccccEEEEEEcccEEEEEEcccEEEEEcccccEEEccEEcccccccccccEEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccEEEEEccccEEEEEEccccHHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHccccccEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccEEEEcccccccEEEEccccEEEccccccccEEEEEEEccEEEEEEccEEEEEEcccc //