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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF67773.1
DDBJ      :             integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  363/915 : Eukaryota  1/199 : Viruses  7/175   --->[See Alignment]
c.1.8d.163.1
:409 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->109 3ju0A PDBj 8e-21 47.3 %
:BLT:PDB   111->212 2kj8A PDBj 2e-29 52.9 %
:RPS:PDB   115->397 3crxA PDBj 6e-22 10.3 %
:RPS:SCOP  34->96 1ex1A1  c.1.8.7 * 5e-04 17.7 %
:RPS:SCOP  115->395 1p7dA  d.163.1.1 * 3e-20 15.6 %
:HMM:SCOP  221->396 1a0pA2 d.163.1.1 * 5.9e-33 32.0 %
:RPS:PFM   227->372 PF00589 * Phage_integrase 1e-14 33.1 %
:HMM:PFM   222->387 PF00589 * Phage_integrase 6.8e-31 28.4 162/173  
:BLT:SWISS 18->402 VINT_BPSFV 1e-90 45.4 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67773.1 GT:GENE ACF67773.1 GT:PRODUCT integrase GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 2550781..2552010 GB:FROM 2550781 GB:TO 2552010 GB:DIRECTION + GB:PRODUCT integrase GB:NOTE identified by match to protein family HMM PF00589 GB:PROTEIN_ID ACF67773.1 GB:DB_XREF GI:194407554 LENGTH 409 SQ:AASEQ MRITLCITEFDLFSIHMLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVSLAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYAKEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVATGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGVRTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAISILKKLQEITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHELGFESAWIEMQLAHVDKNSIRGTYNHAQYLENRRKMMQIYSDMLLNEFPIK GT:EXON 1|1-409:0| BL:SWS:NREP 1 BL:SWS:REP 18->402|VINT_BPSFV|1e-90|45.4|379/385| BL:PDB:NREP 2 BL:PDB:REP 19->109|3ju0A|8e-21|47.3|91/95| BL:PDB:REP 111->212|2kj8A|2e-29|52.9|102/118| RP:PDB:NREP 1 RP:PDB:REP 115->397|3crxA|6e-22|10.3|282/323| RP:PFM:NREP 1 RP:PFM:REP 227->372|PF00589|1e-14|33.1|142/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 222->387|PF00589|6.8e-31|28.4|162/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 34->96|1ex1A1|5e-04|17.7|62/388|c.1.8.7| RP:SCP:REP 115->395|1p7dA|3e-20|15.6|270/280|d.163.1.1| HM:SCP:REP 221->396|1a0pA2|5.9e-33|32.0|169/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1057 OP:NHOMOORG 371 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------1----------------1----------3--------------1-------------------------------------------------------------1----------1------------------------------1332111-1-1-------2--1--1---1-111-------212---2------1------1---------------------------------------3-11-81-D-213325414--111111111112-2-422212273--11---2--112-522-12-2--11124444444452--33-1-----------1--11---1----------4-23--1-172112151-1----3233433312822-3-14355528314222441-5--22512-12-1-64814--1-211-2---2--2-53111361-1---1-21111-2--21-1----------11---23261221-51-122111323314113----41212------5377143378A378642195426891A7854433446474988325912151335334321265267733-266537565648---------22131-1--1--14--2--134213--425-2331--111-12432443231-1----3---122-34535431126113353411111-1----------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------9------------------------------------------------------- --------------------1-----------------------------------1---1----------------------1-------------1--------------------------------------1-----------------------------1-------- STR:NPRED 381 STR:RPRED 93.2 SQ:SECSTR ##################ccHHHHHHcccccccEEEEEETTEEEEEcTTccEEEEEEEEETTEEEEEEEEEETTccHHHHHHHHHHHHHHHHTTccGGGccGGGcccHH#cccHcHHHHHHHHHHHHHTGccHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHccccccHHHHHHHHHHHHHHTccHHHHHHcccTTEEEcccccEEEcccccccccccccccHHHHHHHHHHHHHHcGGGcTTcccccEEcTTHHHHHccccccccccccccTTHHHHHHHHHHHHTcccHHHHHHHTTcccHHHHHcHHcTTccccccHHHHHHHTc######### DISOP:02AL 211-219,408-410| PSIPRED ccccHHHcccccccccccccHHHHHccccccccEEEccccEEEEEEEccccEEEEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHcccHHHcccccccEEEcccccccccEEEEEccHHHHHHHHHHHHHcccccEEEEccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //