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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF67955.1
DDBJ      :             LysR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  650/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->187 3hhgG PDBj 2e-14 33.5 %
:RPS:PDB   1->211 1bi1A PDBj 2e-23 10.8 %
:RPS:SCOP  1->100 1b9mA1  a.4.5.8 * 4e-19 14.0 %
:RPS:SCOP  89->279 1al3A  c.94.1.1 * 2e-20 17.4 %
:HMM:SCOP  1->110 1b9mA1 a.4.5.8 * 7.7e-23 36.2 %
:HMM:SCOP  83->300 1uthA_ c.94.1.1 * 2.8e-34 31.9 %
:RPS:PFM   3->61 PF00126 * HTH_1 1e-10 52.5 %
:RPS:PFM   89->279 PF03466 * LysR_substrate 1e-14 36.2 %
:HMM:PFM   86->285 PF03466 * LysR_substrate 3e-39 31.8 198/209  
:HMM:PFM   3->62 PF00126 * HTH_1 8e-22 48.3 60/60  
:BLT:SWISS 1->247 NAC_ECOLI 4e-38 35.4 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67955.1 GT:GENE ACF67955.1 GT:PRODUCT LysR-family transcriptional regulator GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(803774..804700) GB:FROM 803774 GB:TO 804700 GB:DIRECTION - GB:PRODUCT LysR-family transcriptional regulator GB:NOTE identified by match to protein family HMM PF00126; match to protein family HMM PF03466 GB:PROTEIN_ID ACF67955.1 GB:DB_XREF GI:194407736 LENGTH 308 SQ:AASEQ MELRQLRYFVRIIETGSMGSAAQDLDIGVSALSQQMSRLENELAIRLLQRTSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTASILGIPFIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAVVFQKDKILRWSARPILEEQLFLIGSHALLAALPDNPITPEQLAGIPLIMPSQGHGLRGRLDAVCQEHALNVEIVAEIDGLALLMRAVRDGLGATLQPGAAISHLDNDALRVIGVHNPVLSRPNFLVSLSDDELTPAGLAARVVLTKVMRQLVDAGEWPGATLYAY GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 1->247|NAC_ECOLI|4e-38|35.4|243/305| BL:PDB:NREP 1 BL:PDB:REP 5->187|3hhgG|2e-14|33.5|176/294| RP:PDB:NREP 1 RP:PDB:REP 1->211|1bi1A|2e-23|10.8|204/212| RP:PFM:NREP 2 RP:PFM:REP 3->61|PF00126|1e-10|52.5|59/60|HTH_1| RP:PFM:REP 89->279|PF03466|1e-14|36.2|188/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 86->285|PF03466|3e-39|31.8|198/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|8e-22|48.3|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->100|1b9mA1|4e-19|14.0|100/122|a.4.5.8| RP:SCP:REP 89->279|1al3A|2e-20|17.4|190/237|c.94.1.1| HM:SCP:REP 1->110|1b9mA1|7.7e-23|36.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 83->300|1uthA_|2.8e-34|31.9|213/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 4670 OP:NHOMOORG 656 OP:PATTERN -------------------------------------------------------------------- 34-1521355521194411-13223C111113223247CJ-315--1111--435--2--222112D76731222111-1624-----111--1-----113---311-2--------------------------46622---31621211112---------113112--1-----1----121-----32A9999979958798A724667A8782327121211222GM-3323332233333343317-21-22--223442222111----1--11----1--11111111111-------------1----------2-4433333333212444-111721--4112-8A451211412121---2-27111-----52HAE337986766767677657B-25546H7G7M1-MEEBEGAOQKCEKG15288E435665A7677777788832544------------------------------177129UNFUYkjotdFDEEDRRddHGGIBImSqHeTQ-1JGD79776W9L6WG4A222-3B5223331311225612113221114234-3-332212-22-361-2--1---------------------133962453A472485766235644695567851-11435------D8EH6F9FEDCFCABFF-FEEFFBBFDEFCEEEEFECRXNCD457E9FDGFGGFGEFEFDGNCDABBBC1-833333233333----111113434-275M222422222312111EFHGE6E333C2IJKIKPISDNLNL2FHK21111111117668CCDCC6A887AA88A885451111--1-11------------1--------------------------------------71 -------------2------------------------------------------------------------------------------------------------------------------------------------------------4----------------1--------1---4-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 99.7 SQ:SECSTR HHHHHHHHHHHTTccccHHHHHHHTTccHHHHHHHHHHHHHTTcEEEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHTTTccHHHHHHHHHHcccccccTTccccccHHHHTTcccEcccEEHHHHcccccEEEEEEEccGGGccccTTHHHHHHTTccTTcEEEEcccccEEEETTEEEEccHHHHHHcEEcEEEEEEEcTTccEEEEEEEcGGGTTccTTcEEcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHHcEEEEc# DISOP:02AL 80-87,308-309| PSIPRED ccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEEccEEEEEccccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEHHHHHHHccccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccc //