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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68166.1
DDBJ      :             YcbB
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  264/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.20.1b.160.1
:606 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   235->527 3bkhA PDBj 2e-20 11.4 %
:RPS:SCOP  238->347 1lbuA1  a.20.1.1 * 1e-07 26.9 %
:RPS:SCOP  368->504 1zatA1  b.160.1.1 * 3e-13 17.1 %
:HMM:SCOP  235->349 1lbuA1 a.20.1.1 * 2e-15 39.5 %
:HMM:SCOP  362->532 1zatA1 b.160.1.1 * 2.6e-18 31.3 %
:RPS:PFM   139->239 PF04216 * FdhE 2e-04 27.7 %
:HMM:PFM   368->533 PF03734 * YkuD 8.2e-24 42.6 101/116  
:HMM:PFM   305->339 PF01471 * PG_binding_1 2.7e-10 37.1 35/57  
:BLT:SWISS 1->606 YCBB_ECOLI 0.0 83.0 %
:PROS 410->416|PS00092|N6_MTASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68166.1 GT:GENE ACF68166.1 GT:PRODUCT YcbB GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1089410..1091230 GB:FROM 1089410 GB:TO 1091230 GB:DIRECTION + GB:PRODUCT YcbB GB:NOTE identified by match to protein family HMM PF01471 GB:PROTEIN_ID ACF68166.1 GB:DB_XREF GI:194407947 LENGTH 606 SQ:AASEQ MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDQAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLANTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTTDSAVVSPSAVVDEQTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR GT:EXON 1|1-606:0| BL:SWS:NREP 1 BL:SWS:REP 1->606|YCBB_ECOLI|0.0|83.0|605/615| PROS 410->416|PS00092|N6_MTASE|PDOC00087| SEG 282->291|savvspsavv| SEG 296->307|arrskpapaara| SEG 408->420|nnvvvnppwnvpp| RP:PDB:NREP 1 RP:PDB:REP 235->527|3bkhA|2e-20|11.4|254/260| RP:PFM:NREP 1 RP:PFM:REP 139->239|PF04216|2e-04|27.7|94/276|FdhE| HM:PFM:NREP 2 HM:PFM:REP 368->533|PF03734|8.2e-24|42.6|101/116|YkuD| HM:PFM:REP 305->339|PF01471|2.7e-10|37.1|35/57|PG_binding_1| GO:PFM:NREP 1 GO:PFM GO:0005737|"GO:cytoplasm"|PF04216|IPR006452| RP:SCP:NREP 2 RP:SCP:REP 238->347|1lbuA1|1e-07|26.9|78/83|a.20.1.1| RP:SCP:REP 368->504|1zatA1|3e-13|17.1|111/126|b.160.1.1| HM:SCP:REP 235->349|1lbuA1|2e-15|39.5|81/83|a.20.1.1|1/1|PGBD-like| HM:SCP:REP 362->532|1zatA1|2.6e-18|31.3|115/0|b.160.1.1|1/1|L,D-transpeptidase catalytic domain-like| OP:NHOMO 338 OP:NHOMOORG 264 OP:PATTERN -------------------------------------------------------------------- -21------------------------------------------------------------------------------------1------------1411-422-2---------------111111111-1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------1113-----222111111111111221222222-33334333221122222222222211--11111111111-------------111------------------------------11211-----------------------------1111-----1--11-1------1-------------11-11-411-1-1---------------1-------21-----------------------15--111121----11111111222211222121--1-1--------11111111111111111-1111111111111111111111111-1111111111111111111111111--111111111111--11---------1-1-1211111-11111111----------11-----111-----1-------------11121111111111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 254 STR:RPRED 41.9 SQ:SECSTR ##########################################################################################################################################################################################################################################HHHHHHTccccTTcccHHHHHHHHHHHTTTccccccccc##################################ccHHHHHHHHHHHHHTTccccccccHHHHHHHHHHccccccGGGccccccccHHHHHHHHHcccHHHHHHHHHHHHTTccccccTTccccTTTTccHHHHHHHHHHGGGTccccTTcGGGGcHHHHHHHHHHHHHHHHHGGGccccccHHHHHHHHHHcHHHHHHHTTccTTccHHHHcHHHHHHcHHHHccTTcccccHHHH#####HHHHHHHHTTcc############################################################################### DISOP:02AL 4-7,43-63,65-65,606-607| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHcccHHcccEEEEEEccEEEEEEEcccEEEEEEEEEccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHcHHHHHHcccEEEEcccccEEcccccccccccccccccEEEEccccccccccEEEEEcccccEEEEccccccccccccccccccccEEcccHHHHHHHHHccccccHHHHHHHHccccEEEEEccccccEEEEEEEEEEccccEEEEEcccccccHHHHHHHHHHHHHHHHHc //