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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68372.1
DDBJ      :             protein YafD
Swiss-Prot:YAFD_SALSV   RecName: Full=UPF0294 protein yafD;

Homologs  Archaea  0/68 : Bacteria  133/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.151.1
:266 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   44->260 1dnkA PDBj 2e-16 16.1 %
:RPS:SCOP  40->259 1vybA  d.151.1.1 * 6e-14 16.8 %
:HMM:SCOP  44->260 2dnjA_ d.151.1.1 * 1.5e-25 25.6 %
:HMM:PFM   44->259 PF03372 * Exo_endo_phos 9.9e-15 23.4 214/276  
:BLT:SWISS 1->266 YAFD_SALSV e-154 100.0 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68372.1 GT:GENE ACF68372.1 GT:PRODUCT protein YafD GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 305986..306786 GB:FROM 305986 GB:TO 306786 GB:DIRECTION + GB:PRODUCT protein YafD GB:NOTE identified by match to protein family HMM PF03372 GB:PROTEIN_ID ACF68372.1 GB:DB_XREF GI:194408153 LENGTH 266 SQ:AASEQ MRKNTYAMRYVAGQPAERILPPGSFASIGQALPAGEPLSSEERIRILVWNIFKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAFGRPLDFVFYRGLNVNEASVLVTRASDHNPLLVEFSPGKPEQ GT:EXON 1|1-266:0| SW:ID YAFD_SALSV SW:DE RecName: Full=UPF0294 protein yafD; SW:GN Name=yafD; OrderedLocusNames=SeSA_A0288; SW:KW Complete proteome; Cytoplasm. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->266|YAFD_SALSV|e-154|100.0|266/266| GO:SWS:NREP 1 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| RP:PDB:NREP 1 RP:PDB:REP 44->260|1dnkA|2e-16|16.1|217/250| HM:PFM:NREP 1 HM:PFM:REP 44->259|PF03372|9.9e-15|23.4|214/276|Exo_endo_phos| RP:SCP:NREP 1 RP:SCP:REP 40->259|1vybA|6e-14|16.8|208/236|d.151.1.1| HM:SCP:REP 44->260|2dnjA_|1.5e-25|25.6|215/0|d.151.1.1|1/1|DNase I-like| OP:NHOMO 134 OP:NHOMOORG 133 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------1-------------------111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1-----------------------------------------------1---1--111-----1121-----11----1-11-111------------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--1--------------1---111--------------------------------------111111111111111111111111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 89.1 SQ:SECSTR ##############cccccccc#########cccccTTccccccEEEEEEEEHHHcHHHHHHHHHHHTTccEEEEEEEccTTcHHHHTcccTTccEEEEcccccccccccEEEEEEcTTTEEEEEEEEcccccccEEEEEEETTccccEEEEEEccccGGGHHHHHHHHHHHHHHHHHHHccccEEEEEEccccGGGGGGGcHHHHcTTcEEcccTTccccccccccccEEEEEEcHHHTccHHHHHHHcccccEEEEcc###### DISOP:02AL 1-3,264-267| PSIPRED cccccEEEEEccccccEEEEcccHHHHHHHccccccccccccEEEEEEEEccccccccHHHHHHHHcccccEEEEEEccccccHHHHHHHccccHHHHHHccccccccEEEEEEcccccEEccccccccccccccEEEEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHcccEEEEEccccccccccccEEEEEEEccEEccccccccccccccEEEEEEEEccccc //