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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68613.1
DDBJ      :             RNA polymerase sigma factor for flagellar operon
Swiss-Prot:FLIA_SALTY   RecName: Full=RNA polymerase sigma factor for flagellar operon;AltName: Full=Sigma-F factor;AltName: Full=Sigma-27;AltName: Full=Sigma-28;

Homologs  Archaea  0/68 : Bacteria  889/915 : Eukaryota  22/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13b.52.2
:229 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->226 1rp3E PDBj 8e-28 33.6 %
:RPS:PDB   33->116 1aw8E PDBj 5e-23 20.2 %
:RPS:PDB   167->225 2dk5A PDBj 3e-04 10.9 %
:RPS:SCOP  6->116 1aw8.1  b.52.2.1 * 3e-22 18.2 %
:RPS:SCOP  174->226 1ku3A  a.4.13.2 * 6e-08 32.1 %
:HMM:SCOP  3->79 1iw7F3 a.177.1.1 * 5e-21 36.5 %
:HMM:SCOP  79->157 1rp3A1 a.4.13.1 * 3.4e-17 37.7 %
:HMM:SCOP  137->228 1iw7F2 a.4.13.2 * 1.3e-17 33.7 %
:RPS:PFM   6->76 PF04542 * Sigma70_r2 2e-07 41.2 %
:RPS:PFM   89->125 PF04539 * Sigma70_r3 6e-04 48.6 %
:HMM:PFM   86->156 PF04539 * Sigma70_r3 1.4e-21 29.6 71/78  
:HMM:PFM   175->223 PF04545 * Sigma70_r4 1.3e-19 46.9 49/50  
:HMM:PFM   6->78 PF04542 * Sigma70_r2 1.4e-19 42.9 70/71  
:BLT:SWISS 1->229 FLIA_SALTY e-128 100.0 %
:PROS 33->46|PS00715|SIGMA70_1
:PROS 196->222|PS00716|SIGMA70_2

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68613.1 GT:GENE ACF68613.1 GT:PRODUCT RNA polymerase sigma factor for flagellar operon GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2093095..2093784) GB:FROM 2093095 GB:TO 2093784 GB:DIRECTION - GB:PRODUCT RNA polymerase sigma factor for flagellar operon GB:NOTE identified by match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02479; match to protein family HMM TIGR02937 GB:PROTEIN_ID ACF68613.1 GB:DB_XREF GI:194408394 LENGTH 229 SQ:AASEQ MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL GT:EXON 1|1-229:0| SW:ID FLIA_SALTY SW:DE RecName: Full=RNA polymerase sigma factor for flagellar operon;AltName: Full=Sigma-F factor;AltName: Full=Sigma-27;AltName: Full=Sigma-28; SW:GN Name=fliA; OrderedLocusNames=STM1956; SW:KW Complete proteome; Direct protein sequencing; DNA-binding;Sigma factor; Transcription; Transcription regulation; Virulence. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->229|FLIA_SALTY|e-128|100.0|229/239| GO:SWS:NREP 6 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0016987|"GO:sigma factor activity"|Sigma factor| GO:SWS GO:0006355|"GO:regulation of transcription, DNA-dependent"|Sigma factor| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0009405|"GO:pathogenesis"|Virulence| PROS 33->46|PS00715|SIGMA70_1|PDOC00592| PROS 196->222|PS00716|SIGMA70_2|PDOC00592| BL:PDB:NREP 1 BL:PDB:REP 1->226|1rp3E|8e-28|33.6|223/235| RP:PDB:NREP 2 RP:PDB:REP 33->116|1aw8E|5e-23|20.2|84/90| RP:PDB:REP 167->225|2dk5A|3e-04|10.9|55/91| RP:PFM:NREP 2 RP:PFM:REP 6->76|PF04542|2e-07|41.2|68/70|Sigma70_r2| RP:PFM:REP 89->125|PF04539|6e-04|48.6|37/78|Sigma70_r3| HM:PFM:NREP 3 HM:PFM:REP 86->156|PF04539|1.4e-21|29.6|71/78|Sigma70_r3| HM:PFM:REP 175->223|PF04545|1.3e-19|46.9|49/50|Sigma70_r4| HM:PFM:REP 6->78|PF04542|1.4e-19|42.9|70/71|Sigma70_r2| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| RP:SCP:NREP 2 RP:SCP:REP 6->116|1aw8.1|3e-22|18.2|110/115|b.52.2.1| RP:SCP:REP 174->226|1ku3A|6e-08|32.1|53/61|a.4.13.2| HM:SCP:REP 3->79|1iw7F3|5e-21|36.5|74/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 79->157|1rp3A1|3.4e-17|37.7|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 137->228|1iw7F2|1.3e-17|33.7|92/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2255 OP:NHOMOORG 911 OP:PATTERN -------------------------------------------------------------------- 22446-1111112233333-36222333333235557465522341113112221111--33B1755CCA51111111211282244411111111-1-111112211221111111222222211-1111111114555511144M79666445885655465545889645445546544421-111113454444444434444446555554444554433222222642222222222222222222211-211211111111111111111111111111111111111111111111111111111111111111155554444444444455444333534324434444444335444454-11435111121111111111121111111111111111-111121112111211222122212111112212222222111111111111111111111111--2211-1111111111111111222222122433353233432223333424334343211333342222113324333222421111111333223322132222222221224333233221225331222122222222222222222211442323433343355444534444534555541-1643311111142333333332333333-343342323333423322333333333344444444344444433132133223434443434431121233333333123331111111111111121111111111333333222232222222211111111114445444445433322222222231111112422222222222221321111-1---1--1-111-111--1112142211111241 -------1----------------------------------------------------------------------------------------------------1-------------------------------------------------1----------------4111H111-15436-42131---2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 228 STR:RPRED 99.6 SQ:SECSTR ccHHHHHHHTHHHHHHHHGGGccTccccEEEEHHHHHHTccTTcEEEEEETTTccEEEEEcEEEcTTcccEEccGGGGGTccTTccEEEEccccccHHHHTTcccccccEETTTEETccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTT# DISOP:02AL 228-230| PSIPRED ccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHcccHHHHccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc //