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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68919.1
DDBJ      :             putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  127/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:559 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   129->298 2nooA PDBj 3e-07 30.1 %
:RPS:PDB   1->78 2ek5C PDBj 4e-04 11.5 %
:RPS:PDB   122->559 3dp8A PDBj 1e-38 15.6 %
:RPS:SCOP  15->60 1cgpA1  a.4.5.4 * 7e-04 21.7 %
:RPS:SCOP  118->559 1uqwA  c.94.1.1 * 2e-39 16.2 %
:HMM:SCOP  108->558 1jetA_ c.94.1.1 * 2.3e-48 22.2 %
:RPS:PFM   164->318 PF00496 * SBP_bac_5 5e-08 32.9 %
:HMM:PFM   164->302 PF00496 * SBP_bac_5 8.3e-19 23.7 139/372  
:HMM:PFM   22->44 PF08281 * Sigma70_r4_2 0.0004 30.4 23/54  
:HMM:PFM   404->440 PF01949 * DUF99 0.00088 21.6 37/187  
:HMM:PFM   462->554 PF12449 * DUF3684 0.00072 26.7 90/1088  
:BLT:SWISS 18->557 SGRR_ECOUT 6e-49 29.2 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68919.1 GT:GENE ACF68919.1 GT:PRODUCT putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 2872149..2873828 GB:FROM 2872149 GB:TO 2873828 GB:DIRECTION + GB:PRODUCT putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component GB:NOTE identified by match to protein family HMM PF00496 GB:PROTEIN_ID ACF68919.1 GB:DB_XREF GI:194408700 LENGTH 559 SQ:AASEQ MSIFEAHFRRLHARYGAGQTHELQMQEIAAIFGCSVRNCRIALKKMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLFSQNVNKLLEKQDYGNVLRFIGNDKYLLDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPLVPLRRTERHLLRQCLSGLTRYDAVQGRIVPDIAHYWTHNEDFTRWEFWLKSTARFADGCELDASAVQRCLLAASQSPQFAPIFSPIKTITADAPWHLVIETHHPVRRLDCLLATQPTMLFDYQHGHIRCTGAFHLQEHSDNFMVLRRNQHWHQARPGLDEITIFTWAPEHISMSFIPLLRGEEVQDDRPLNERSLEQSCCFVLLDGDGAFADEAGRRFINYLLQPVELLSQTQLPDEYARILSVAQGMLPQWNHRPVDFGGITAPFNLRQPVIISTFQQPELVELAGAIRRLLERWHIRAEIRIDAFDHFNNQLRPPADIWLSNFMLDTLSVPAFLEWLASTALFTRLPESQRQNLNALLPTILNSDDEQAFATIAAFFHEMTHQRYVIPLLHHWMEFATEKSFTWRDLNTLGWPDFSQLWLE GT:EXON 1|1-559:0| BL:SWS:NREP 1 BL:SWS:REP 18->557|SGRR_ECOUT|6e-49|29.2|513/551| BL:PDB:NREP 1 BL:PDB:REP 129->298|2nooA|3e-07|30.1|166/494| RP:PDB:NREP 2 RP:PDB:REP 1->78|2ek5C|4e-04|11.5|78/117| RP:PDB:REP 122->559|3dp8A|1e-38|15.6|435/498| RP:PFM:NREP 1 RP:PFM:REP 164->318|PF00496|5e-08|32.9|152/366|SBP_bac_5| HM:PFM:NREP 4 HM:PFM:REP 164->302|PF00496|8.3e-19|23.7|139/372|SBP_bac_5| HM:PFM:REP 22->44|PF08281|0.0004|30.4|23/54|Sigma70_r4_2| HM:PFM:REP 404->440|PF01949|0.00088|21.6|37/187|DUF99| HM:PFM:REP 462->554|PF12449|0.00072|26.7|90/1088|DUF3684| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 2 RP:SCP:REP 15->60|1cgpA1|7e-04|21.7|46/68|a.4.5.4| RP:SCP:REP 118->559|1uqwA|2e-39|16.2|431/487|c.94.1.1| HM:SCP:REP 108->558|1jetA_|2.3e-48|22.2|446/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 256 OP:NHOMOORG 127 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------22222222-22221211---1321-------1111-132-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1--------3-------------------------------------------------------------------------11-----------------------------------------22212212222222222-221222222222322222232211111323223334333432322222122--322222222222------------------------------------------------------------------------22122222243424------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 524 STR:RPRED 93.7 SQ:SECSTR ccHHHHHHHHHHHHHHHTccccccHHHHHHHHTccHHHHHHHHHHHHHHTcEEEETTTEEEcTTHHHHHHHHHHHHHHH###################################cccccccEEEEEccccccccTTcccTTccHHHHHHHccccEEEcTTTccEEEccEEEEEEcTTccEEEEEEcccccccccccccHHHHHHHHHTTGGGGTTcHHHHHEEEEEEccccEEEEEEccccTTHHHHHTcccccccTTccccccccccEEEEEETTTEEEEEEccccccccccccEEEEEEcccHEEcTTcccHHHHHHHHTcTTcEEEEEEEEEEEEEcTTcTTTTcHHHHHHHHHHccHHHHHHHccccccccccHHHHHHHHHHTTccccTTccccEETTEEcEEEEEETTcHHHHHHHHHHHHHHHTTTcEEEEEEcHHHHHHHHHHTcccEEEEEcccTTTTTHHHHHHTTccccHHHHHHTTcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHTTcEEEEEEEEEEEEEcGGGccccccccTTcccGGcGcc DISOP:02AL 110-120| PSIPRED ccHHHHHHHHHHHHccccccEEccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHHHccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHEEEEccccEEEEEEEEEEEEcccccEEEEEEccccEEcccccccHHHHHHHHHHHHccccHHHHHHHccEEEEccccEEEEEEccccHHHHHHHHcccccccccccccccccccEEEEEEcccEEEEEEcccccccccEEEEEEEEEEccHHHHHHHHHHcccccccccccccEEEEccccEEEEEccccccccHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccHHcccccccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHcccccEEEEcccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcccEEEEEEcccccccHHccccc //