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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68949.1
DDBJ      :             transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  300/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:315 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->85 1iz1B PDBj 2e-06 40.4 %
:RPS:PDB   1->123 1b9mA PDBj 2e-16 13.1 %
:RPS:PDB   103->313 1al3A PDBj 3e-09 15.3 %
:RPS:SCOP  3->114 1b9mA1  a.4.5.8 * 1e-14 14.3 %
:RPS:SCOP  106->313 1al3A  c.94.1.1 * 6e-10 15.1 %
:HMM:SCOP  14->102 1ixcA1 a.4.5.37 * 3.6e-18 34.8 %
:HMM:SCOP  99->314 2esnA2 c.94.1.1 * 3.4e-16 20.0 %
:RPS:PFM   16->75 PF00126 * HTH_1 2e-10 50.0 %
:HMM:PFM   18->75 PF00126 * HTH_1 3.1e-20 50.0 58/60  
:HMM:PFM   101->312 PF03466 * LysR_substrate 1.7e-18 17.9 201/209  
:BLT:SWISS 12->315 YJIE_ECOLI 8e-29 29.8 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68949.1 GT:GENE ACF68949.1 GT:PRODUCT transcriptional regulator GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(875583..876530) GB:FROM 875583 GB:TO 876530 GB:DIRECTION - GB:PRODUCT transcriptional regulator GB:NOTE identified by match to protein family HMM PF00126; match to protein family HMM PF03466 GB:PROTEIN_ID ACF68949.1 GB:DB_XREF GI:194408730 LENGTH 315 SQ:AASEQ MLIRLQLMQYRHHLELTWLEDCLALKETLNFSKASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYTLKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKMMRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQFPYLSFSSQSGLGRIIANTASINRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSLARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWEIFVEEQI GT:EXON 1|1-315:0| BL:SWS:NREP 1 BL:SWS:REP 12->315|YJIE_ECOLI|8e-29|29.8|292/303| BL:PDB:NREP 1 BL:PDB:REP 39->85|1iz1B|2e-06|40.4|47/294| RP:PDB:NREP 2 RP:PDB:REP 1->123|1b9mA|2e-16|13.1|122/255| RP:PDB:REP 103->313|1al3A|3e-09|15.3|202/237| RP:PFM:NREP 1 RP:PFM:REP 16->75|PF00126|2e-10|50.0|60/60|HTH_1| HM:PFM:NREP 2 HM:PFM:REP 18->75|PF00126|3.1e-20|50.0|58/60|HTH_1| HM:PFM:REP 101->312|PF03466|1.7e-18|17.9|201/209|LysR_substrate| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 3->114|1b9mA1|1e-14|14.3|112/122|a.4.5.8| RP:SCP:REP 106->313|1al3A|6e-10|15.1|199/237|c.94.1.1| HM:SCP:REP 14->102|1ixcA1|3.6e-18|34.8|89/0|a.4.5.37|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 99->314|2esnA2|3.4e-16|20.0|210/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 588 OP:NHOMOORG 303 OP:PATTERN -------------------------------------------------------------------- -1-----111---------------------------222-111----------1-----------1-1-1--------1---------------------2-------1----------------------------------1--111111----------1--1212---------------------1-22222212212222211-3331222---1-1-11111112---------------------1---1-----11---1--------------------------------------------------------1--------1-1----1--1----1211--11-1---1311--------1---------1-311------------------3---21-5131---211----151112-22-1-2----2-51-111111--------------------------------------------63337445571111133651111125553544--5411132243535--------1-1122212---1-1--------1-2--1--------------1------------------------1-1-22-1--1----1---------1-----1-----------------11323113232321233-231342-33222322232-4532221-2121212222112111112-1111-----------------------------225---1-----------22222-2-1-3-3343234322423142311111111111222--------1-221-1----1--------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------5-----------------3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 312 STR:RPRED 99.0 SQ:SECSTR ccccccEETTEEEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcHHHHHHHHTccccccEEEHHcccccccTcccTTccccccHHHHTcccEEcHHHHHcHHHHTTTccEccEEEEEEEEEcEEEEEcTTcTTTTccccHHHHHTcEEEEEcTTcTTHHHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGccHTTTcTTcEEEEccTTcccEEEEE#EEETTccccHHHHHHHHHHcTT## DISOP:02AL 1-9,11-13,95-101| PSIPRED ccccHHHcccHHcccHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccccccccEEEEEEEEccEEEEEccccccccccccHHHHHcccEEEccccccHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHccccEEEHHHHHHHHHHccccEEEcccccccEEEEEEEEEEEccccccHHHHHHHHHHHHHcc //