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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF68985.1
DDBJ      :             zinc-binding domain of primase-helicase family
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  143/915 : Eukaryota  2/199 : Viruses  1/175   --->[See Alignment]
c.37.1g.41.3
:895 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   44->99 1d0qA PDBj 5e-05 16.7 %
:RPS:PDB   159->333 1ddeA PDBj 9e-12 20.8 %
:RPS:SCOP  44->99 1d0qA  g.41.3.2 * 7e-06 16.7 %
:RPS:SCOP  159->282 1khtA  c.37.1.1 * 6e-10 13.3 %
:RPS:SCOP  500->584 1l8qA2  c.37.1.20 * 8e-04 14.8 %
:HMM:SCOP  1->100 1d0qA_ g.41.3.2 * 4.1e-07 25.8 %
:RPS:PFM   43->68 PF08273 * Prim_Zn_Ribbon 8e-12 88.5 %
:RPS:PFM   350->611 PF06048 * DUF927 3e-62 49.4 %
:HMM:PFM   331->614 PF06048 * DUF927 4.1e-98 43.6 280/285  
:HMM:PFM   33->68 PF08273 * Prim_Zn_Ribbon 2.1e-17 72.2 36/40  
:BLT:SWISS 1->312 PRIM_BPP4 5e-26 34.0 %
:BLT:SWISS 758->895 ATCL_MYCPN 5e-04 33.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF68985.1 GT:GENE ACF68985.1 GT:PRODUCT zinc-binding domain of primase-helicase family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2556453..2559140) GB:FROM 2556453 GB:TO 2559140 GB:DIRECTION - GB:PRODUCT zinc-binding domain of primase-helicase family GB:NOTE identified by match to protein family HMM PF06048; match to protein family HMM PF08273 GB:PROTEIN_ID ACF68985.1 GB:DB_XREF GI:194408766 LENGTH 895 SQ:AASEQ MKTQSVSTISGAAIGRWPYILSALGIKVPSAGHHGACPACGGKDRFRLDDKAGRGTWFCNQCGHGDGLDLVRLVTGRKIKEAAGMVSEALALPEIQEKPALPARKKAAGKEAGAERYTRLRQQSCNGEPVYLTNKGLHGYSLPLLSQPLNLAGITFCSGSLLLPLTDISGNITGGQLINPDGDKSLLPGSQLSGAFIALTDIPAETPEQVIITEGFATALTVSLLTEGWIVAAVAATNLLKVTEQIRKRWPETRIILAGDNDLADGKENTGRIQAEKAAKAVDGWVTLPPVRHKADWDDYRQEVGKERARDAFREEMTLHGKGQTRLPEGFRLTKEYLWYDKLVNKSDGDTEIRNIKISSPLRVTAITSDADGSNYGRLLEWEDTNGNSRKWAMPMEMLGGSGEELRRVLLVNGLSYININGMARAFLMEYISLCKPDRKVTCVNKTGWHGGVYVLQDEVIGREAQSVILQTSSVQGRDFRVSGTSEDWRENIGRYCINNARLAFAVSLAFAAPLLKLVGIGGGGYHLKGESTDGKTTTMKVAASVCGGTDFWHTWRATGNALEGTASRRNDATLMLDEIREVDGREAGNIAYMLANGQGKARARTDGSVRETNRWNLLFLSTGELSLVEHAASAGERTYAGVEVRMIQIPSDSGKYGVFEELHGFSSGKTLAEHLEQHVAHYHGAPFRDWLHCLTADLPELTSQAKALLKEYTRRLTPENAGNQVGRAVTRFALVAMAGELATKAGITGWPEGEAFRAAQSCLAAWMADRGHTANQEDKAALEQVRDFMTRNQFSRFADWNDDRNRPVSMMGFRKVDKGDNVTEPVVTFYVLPSGWKEICKGFDSRKVARLCVDAGWLKPGEDGRTQNSIRLPEIGLKRVYQFNTQVLGSAEPE GT:EXON 1|1-895:0| BL:SWS:NREP 2 BL:SWS:REP 1->312|PRIM_BPP4|5e-26|34.0|303/777| BL:SWS:REP 758->895|ATCL_MYCPN|5e-04|33.9|118/100| SEG 31->42|aghhgacpacgg| SEG 103->116|arkkaagkeagaer| RP:PDB:NREP 2 RP:PDB:REP 44->99|1d0qA|5e-05|16.7|54/102| RP:PDB:REP 159->333|1ddeA|9e-12|20.8|168/310| RP:PFM:NREP 2 RP:PFM:REP 43->68|PF08273|8e-12|88.5|26/37|Prim_Zn_Ribbon| RP:PFM:REP 350->611|PF06048|3e-62|49.4|257/279|DUF927| HM:PFM:NREP 2 HM:PFM:REP 331->614|PF06048|4.1e-98|43.6|280/285|DUF927| HM:PFM:REP 33->68|PF08273|2.1e-17|72.2|36/40|Prim_Zn_Ribbon| GO:PFM:NREP 3 GO:PFM GO:0003896|"GO:DNA primase activity"|PF08273|IPR013237| GO:PFM GO:0004386|"GO:helicase activity"|PF08273|IPR013237| GO:PFM GO:0008270|"GO:zinc ion binding"|PF08273|IPR013237| RP:SCP:NREP 3 RP:SCP:REP 44->99|1d0qA|7e-06|16.7|54/102|g.41.3.2| RP:SCP:REP 159->282|1khtA|6e-10|13.3|120/190|c.37.1.1| RP:SCP:REP 500->584|1l8qA2|8e-04|14.8|81/213|c.37.1.20| HM:SCP:REP 1->100|1d0qA_|4.1e-07|25.8|97/0|g.41.3.2|1/1|Zinc beta-ribbon| OP:NHOMO 229 OP:NHOMOORG 147 OP:PATTERN --------------------------------------------------2----------------- -----------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------1------------3313112-1123-1-12-1----------------------------------------------------------------------1-1---------------------------------1----------------------------------------------------1123---------------------------1-----22222222-1-1-----------------------------------1---------111121--------221131-2---------22-----2------12---14------11133-1----1---1211-----------1------------------------------------1123-----1---1------1-----1-----2----------223-11-23--------12--1-1--11-1-----22--123--11-1-2-221-1111-111-----2--22212212312---------2-25--1------------12-111--11--11-----1--2-1-----121------------------------12------------------------------------------------------------------------ --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------1---- --------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 331 STR:RPRED 37.0 SQ:SECSTR ###########################################ccEEEETT#TTTEEEETTTcEEcHHHHHHHHHTccHHHHHHHHHHHHTccccTTcccHHHHHHHHHHHHHHHHHHHHHHcH##HHHHHHHHTTccHHHHTcHHHHHTTTcEEccccEEEEEEEcTTccEEEEEEEEccccccccGGGcccTHHHHHHHccccccccEEEEccHHHHHHHHHHHHTTcccEEEcccccccHHHHHHHHHHccEEEEEEEcHHHHHHHHHHHHGGGccTTcEEEEEEEE##ETccHHHHHHHHHHHHHHHHHHTcEEHHHHHHHHHGGGccTTcHHHHHTTcHHHHHHHHHHHHHTcccHHHHHHHHHHHH#####HHHTccc############################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-4,92-114,321-335,475-483,599-610,892-896| PSIPRED cccHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccEEEEEcccEEEEEcccccccHHHHHHHHHcccHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccccccccccccccEEEccccccccccEEEEEccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHccEEEEccccccccccHHHHHccHHHHHHHHHHHHccccccccccccccccccccEEEEccccccccccccccEEEcccEEEEEEEEccccccEEEEEEEEcccccccEEcccHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccEEEEcccccccEEEcccEEEccccccEEEcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHccccHHcccccHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccccHHHcccccccccccccEEEEEEcccccHHHHHHHcccEEEccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccEEEccccccccccEEEEEccHHHHHHHHcccHHHHHHHHHHcccEEcccccccEEEEEEcccccEEEEEEEHHHccccccc //