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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF69022.1
DDBJ      :             transcriptional regulator, RpiR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  438/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.80.1
:293 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->81 2o3fA PDBj 4e-07 41.3 %
:BLT:PDB   116->236 2i2wD PDBj 4e-07 27.3 %
:RPS:PDB   12->240 2cvpA PDBj 4e-31 10.6 %
:RPS:SCOP  13->87 2o3fA1  a.4.1.20 * 3e-20 33.3 %
:RPS:SCOP  121->239 1j5xA  c.80.1.1 * 3e-26 21.8 %
:HMM:SCOP  104->272 1moqA_ c.80.1.1 * 1.7e-37 32.5 %
:RPS:PFM   14->102 PF01418 * HTH_6 2e-14 45.9 %
:RPS:PFM   146->239 PF01380 * SIS 6e-10 34.0 %
:HMM:PFM   13->117 PF01418 * HTH_6 2.2e-27 37.6 101/107  
:HMM:PFM   140->268 PF01380 * SIS 1e-22 27.8 126/131  
:BLT:SWISS 9->289 Y143_HAEIN 2e-81 50.7 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF69022.1 GT:GENE ACF69022.1 GT:PRODUCT transcriptional regulator, RpiR family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(1220004..1220885) GB:FROM 1220004 GB:TO 1220885 GB:DIRECTION - GB:PRODUCT transcriptional regulator, RpiR family GB:NOTE identified by match to protein family HMM PF01380; match to protein family HMM PF01418 GB:PROTEIN_ID ACF69022.1 GB:DB_XREF GI:194408803 LENGTH 293 SQ:AASEQ MEPQPPRLKPGKILDTLGAMQKSLTRASQRIAQYILAFPRQVTQSSIADLSRDTQAGEATVIRFCRTLGYKGFQDFKMDLAIELATTESDDSSPLLDAEVSESDDAHAIGLKLQNTISNVLSETLNLLDMQQVLGVVDALRHCHSVYIFGVGSSGITALDMKHKLMRIGLRGDAVSNNHFMYMQATLLKAGDVAMGVSHSGTSPETVHSLRLARQAGATTVAITHNLGSPLCEEADFCLINGNRQGMLQGDSIGTKAAQLFVFDLLYTLLVQSSPEQARESKLRTMNALDMTK GT:EXON 1|1-293:0| BL:SWS:NREP 1 BL:SWS:REP 9->289|Y143_HAEIN|2e-81|50.7|280/288| BL:PDB:NREP 2 BL:PDB:REP 17->81|2o3fA|4e-07|41.3|63/75| BL:PDB:REP 116->236|2i2wD|4e-07|27.3|121/178| RP:PDB:NREP 1 RP:PDB:REP 12->240|2cvpA|4e-31|10.6|217/557| RP:PFM:NREP 2 RP:PFM:REP 14->102|PF01418|2e-14|45.9|85/102|HTH_6| RP:PFM:REP 146->239|PF01380|6e-10|34.0|94/131|SIS| HM:PFM:NREP 2 HM:PFM:REP 13->117|PF01418|2.2e-27|37.6|101/107|HTH_6| HM:PFM:REP 140->268|PF01380|1e-22|27.8|126/131|SIS| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01418|IPR000281| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01418|IPR000281| GO:PFM GO:0005529|"GO:sugar binding"|PF01380|IPR001347| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF01380|IPR001347| RP:SCP:NREP 2 RP:SCP:REP 13->87|2o3fA1|3e-20|33.3|75/83|a.4.1.20| RP:SCP:REP 121->239|1j5xA|3e-26|21.8|119/319|c.80.1.1| HM:SCP:REP 104->272|1moqA_|1.7e-37|32.5|166/0|c.80.1.1|1/1|SIS domain| OP:NHOMO 1016 OP:NHOMOORG 443 OP:PATTERN -------------------------------------------------------------------- ----1--------------------1-----------1-2--3-15-----11-1--3--21-11111211----2111--------------------------------------------------------------------------------------------------------12---11---11111122221312223422512122-211132332223113333333333333331132621-43--31345--4422511133311111111--211222121211111111111111122---22242211B333332313-141112222-11--11------------1-41--1----------------1--------11111111112--------122--2113111111321-11--13-----1---------------1--------------------------------1-------13333332555532545554442352233--4412-11111322411-----1-1111111-----------------------------------------------------------------21311-1-2-11211111111111111111-------------64124524445455533-4444657344453444445555222344533333333434334533333331-544344444444---------------232111-21111112232----------4122222232322222233----------3334333332224411---------------1----------------1------1---1---------------321-24222--- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----1------1--1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 282 STR:RPRED 96.2 SQ:SECSTR ###########HcTTHHHHTEEEEccccEEEEEcTTccccHHHHHHHHHHHHHTTHHHHHHHHHTTccccTTTTccccHHHHTcTHHHHHHHHTTccTccccEETTEEcHHHHHHHHHHHHHHHHHHHTTccccTTcccccEEEEEccGGGTHHHHHHHHHTGGGGTTccEEEEEccHHHHHHHTTccTTcEEEEEEccccccHHHHHHHHHHHHHHHHHHccGGGGGGTEEEEEccHHHccccccccccHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTTHH DISOP:02AL 1-9,23-24,290-294| PSIPRED ccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHccccEEEEEcccccHHHHHccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //