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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF69057.1
DDBJ      :             LysR substrate binding domain protein
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  691/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:307 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   100->285 2h9qD PDBj 4e-12 29.2 %
:RPS:PDB   10->217 1b9nB PDBj 1e-24 10.0 %
:RPS:SCOP  10->112 1b9mA1  a.4.5.8 * 2e-19 18.4 %
:RPS:SCOP  103->305 1i69A  c.94.1.1 * 1e-22 22.7 %
:HMM:SCOP  10->122 1b9mA1 a.4.5.8 * 3.4e-25 40.6 %
:HMM:SCOP  97->306 1uthA_ c.94.1.1 * 1.1e-31 27.1 %
:RPS:PFM   13->72 PF00126 * HTH_1 2e-09 51.7 %
:RPS:PFM   98->304 PF03466 * LysR_substrate 5e-13 30.3 %
:HMM:PFM   100->305 PF03466 * LysR_substrate 1.6e-36 27.6 203/209  
:HMM:PFM   13->72 PF00126 * HTH_1 1.7e-21 55.9 59/60  
:BLT:SWISS 1->306 YDCI_ECOLI e-147 83.3 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF69057.1 GT:GENE ACF69057.1 GT:PRODUCT LysR substrate binding domain protein GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1762997..1763920 GB:FROM 1762997 GB:TO 1763920 GB:DIRECTION + GB:PRODUCT LysR substrate binding domain protein GB:NOTE identified by match to protein family HMM PF00126; match to protein family HMM PF03466 GB:PROTEIN_ID ACF69057.1 GB:DB_XREF GI:194408838 LENGTH 307 SQ:AASEQ MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVKVLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSDPELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMPAGCIETLSASLSRQLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAGEPIGILTRVDIPLSTGAQMLIAAIRKSMPL GT:EXON 1|1-307:0| BL:SWS:NREP 1 BL:SWS:REP 1->306|YDCI_ECOLI|e-147|83.3|306/307| BL:PDB:NREP 1 BL:PDB:REP 100->285|2h9qD|4e-12|29.2|178/219| RP:PDB:NREP 1 RP:PDB:REP 10->217|1b9nB|1e-24|10.0|200/245| RP:PFM:NREP 2 RP:PFM:REP 13->72|PF00126|2e-09|51.7|60/60|HTH_1| RP:PFM:REP 98->304|PF03466|5e-13|30.3|198/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 100->305|PF03466|1.6e-36|27.6|203/209|LysR_substrate| HM:PFM:REP 13->72|PF00126|1.7e-21|55.9|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 10->112|1b9mA1|2e-19|18.4|103/122|a.4.5.8| RP:SCP:REP 103->305|1i69A|1e-22|22.7|194/206|c.94.1.1| HM:SCP:REP 10->122|1b9mA1|3.4e-25|40.6|106/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 97->306|1uthA_|1.1e-31|27.1|207/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 5993 OP:NHOMOORG 702 OP:PATTERN -----------------------1-----------111-1-------------1-------------- 4741H22366631286611-15114E11111354548CNM-62A21221--15352-3--323-74G7EB3-111--1-124511--12221-211---114-1131213---------------1---1----1-46634---215326445343311111134368661111111111111232-----53C66666867265468571A99D668243822-566654JU111-1111-1111113111512142132212443323222-13111-------------------------------------111-----327C333333323225333222721-172421A955-212622111--22127333-----33DDI217BE7776576667667G-57B67VCE9F5-TDDJEGGVTKHIPI762C7N65795EGBABBBBBB75685343------------------------------2BH32GxgXhlnp*qsNMLLJii*sOMOPEO*U*iytn-1SPHAAIEBlHZ8jM8A65432B5222221213389A422-2121127223-2-263534154247613--1------------------11--A9C79472A58275A677164977798848681-13439------D9GF7EAGGGCGECCGF-GFFFGBAFFEGDFEEFFECRWPGH598EBCACEEDDBEBEBADQAA8BBBC2-744455435566--12111112323138GQ323324111112331DCBAE6C245P4XYZZVdXdIbacU9KKO1221112226598C5555569866BBEEHEE9B921111-3222------------1-------------------------------------371 -------------1------------------------------------------------------------------------------------------------------------------------------------------------7----------------1------------8-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 306 STR:RPRED 99.7 SQ:SECSTR EEETTEEHHEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTccHTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHcTTcEEEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGEEEHHTccccEEEEEEccHHHHHHHHHHTccEEEEEGGGcHcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTcT# DISOP:02AL 1-4,95-96| PSIPRED ccccccccccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEEcccccccccEEEEEEEEccEEEEEccccccccccccHHHHccccEEEccccccHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHcccEEEEccHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHccc //