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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF70114.1
DDBJ      :             arabinose operon regulatory protein
Swiss-Prot:ARAC_SALTY   RecName: Full=Arabinose operon regulatory protein;

Homologs  Archaea  0/68 : Bacteria  275/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1b.82.4
:281 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->175 1xjaC PDBj 2e-86 89.3 %
:BLT:PDB   175->281 2k9sA PDBj 7e-58 97.2 %
:RPS:PDB   7->167 2arcA PDBj 3e-14 82.0 %
:RPS:PDB   176->278 1bl0A PDBj 2e-21 19.6 %
:RPS:SCOP  8->172 1xjaA  b.82.4.1 * 1e-48 81.8 %
:RPS:SCOP  174->278 1v4aA1  a.24.16.4 * 1e-18 11.5 %
:HMM:SCOP  7->167 2arcA_ b.82.4.1 * 1.1e-38 29.2 %
:HMM:SCOP  175->227 1d5yA1 a.4.1.8 * 5.4e-08 28.8 %
:HMM:SCOP  230->279 1d5yA2 a.4.1.8 * 2.3e-12 42.0 %
:RPS:PFM   45->100 PF02311 * AraC_binding 4e-09 40.0 %
:RPS:PFM   239->277 PF00165 * HTH_AraC 5e-06 46.2 %
:HMM:PFM   23->160 PF02311 * AraC_binding 5.6e-29 25.2 131/136  
:HMM:PFM   186->227 PF00165 * HTH_AraC 1.3e-11 31.7 41/42  
:HMM:PFM   239->277 PF00165 * HTH_AraC 1.1e-12 50.0 38/42  
:BLT:SWISS 1->281 ARAC_SALTY e-162 100.0 %
:PROS 231->273|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70114.1 GT:GENE ACF70114.1 GT:PRODUCT arabinose operon regulatory protein GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 116839..117684 GB:FROM 116839 GB:TO 117684 GB:DIRECTION + GB:PRODUCT arabinose operon regulatory protein GB:NOTE identified by match to protein family HMM PF00165; match to protein family HMM PF02311 GB:PROTEIN_ID ACF70114.1 GB:DB_XREF GI:194409895 LENGTH 281 SQ:AASEQ MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLLLRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE GT:EXON 1|1-281:0| SW:ID ARAC_SALTY SW:DE RecName: Full=Arabinose operon regulatory protein; SW:GN Name=araC; OrderedLocusNames=STM0104; SW:KW Activator; Arabinose catabolism; Carbohydrate metabolism;Complete proteome; Cytoplasm; DNA-binding; Repressor; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->281|ARAC_SALTY|e-162|100.0|281/281| GO:SWS:NREP 6 GO:SWS GO:0019568|"GO:arabinose catabolic process"|Arabinose catabolism| GO:SWS GO:0005975|"GO:carbohydrate metabolic process"|Carbohydrate metabolism| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| PROS 231->273|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 150->161|llainlleqlll| BL:PDB:NREP 2 BL:PDB:REP 7->175|1xjaC|2e-86|89.3|169/169| BL:PDB:REP 175->281|2k9sA|7e-58|97.2|107/107| RP:PDB:NREP 2 RP:PDB:REP 7->167|2arcA|3e-14|82.0|161/161| RP:PDB:REP 176->278|1bl0A|2e-21|19.6|102/116| RP:PFM:NREP 2 RP:PFM:REP 45->100|PF02311|4e-09|40.0|55/130|AraC_binding| RP:PFM:REP 239->277|PF00165|5e-06|46.2|39/40|HTH_AraC| HM:PFM:NREP 3 HM:PFM:REP 23->160|PF02311|5.6e-29|25.2|131/136|AraC_binding| HM:PFM:REP 186->227|PF00165|1.3e-11|31.7|41/42|HTH_AraC| HM:PFM:REP 239->277|PF00165|1.1e-12|50.0|38/42|HTH_AraC| GO:PFM:NREP 5 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02311|IPR003313| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 2 RP:SCP:REP 8->172|1xjaA|1e-48|81.8|165/165|b.82.4.1| RP:SCP:REP 174->278|1v4aA1|1e-18|11.5|104/151|a.24.16.4| HM:SCP:REP 7->167|2arcA_|1.1e-38|29.2|161/0|b.82.4.1|1/1|Regulatory protein AraC| HM:SCP:REP 175->227|1d5yA1|5.4e-08|28.8|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 230->279|1d5yA2|2.3e-12|42.0|50/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 545 OP:NHOMOORG 276 OP:PATTERN -------------------------------------------------------------------- ----1--------------------1---------------2---21------1---------------1-1----11--1-------2231-------------7-2-2--------------------------1-------2-311-------------------1----------------------112111112-2-2211227433112223358--22223215*-----------------------------1---------21--------1------1111111111111111111111111---------23--81-12-121-17----3446-1---11--54----1--23-25------1----------41----1-13---------------------1----11221121-23-1-----1----1-----------------1-----------------------------------------1111-31111--111111-12-1-------1-1--------21-------11--------------1------1-------------------2------------------------------234-1------------------------1-------------2121-111221111121-21-112111121211111345411---2212222222222222121-1111--222122312222---------1111-1------1-1------11---------1-2-1121--112--1---------------1321------1211---1111----------------------------------------------------------------1- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------7------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 276 STR:RPRED 98.2 SQ:SECSTR #####ccTTcTTcccccccEEEEEEEETTcTTcccEEETTccccEEEEEEEEEcEEEEETTEEEEEcTTcEEEEcTTccEEEEEcTTccEEEEEEEEEcccGGGGGGccccEEETTEEEEcccTTTHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcTTTccHHHHHHHHHHHHHHHTTTTcHccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHTTcc DISOP:02AL 1-3,166-176,279-282| PSIPRED ccccccccccccccccEEEEccccccccccccccEEcccccccEEEEEEEEccEEEEEEccEEEEEccccEEEEccccEEEEEEccccccEEEEEEEEcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHccc //