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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : ACF70211.1
DDBJ      :             type I secretion membrane fusion protein, HlyD family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  354/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.82.1b.84.1f.5.1
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   153->343 3fppB PDBj 3e-05 26.7 %
:RPS:PDB   44->103 2edgA PDBj 2e-05 15.0 %
:RPS:PDB   243->308 2ejmA PDBj 6e-06 9.4 %
:RPS:SCOP  45->95 1bdoA  b.84.1.1 * 9e-06 13.7 %
:RPS:SCOP  142->223 1wp1A  f.5.1.1 * 2e-04 14.8 %
:RPS:SCOP  244->393 1x8mA  b.82.1.13 * 3e-21 17.8 %
:RPS:PFM   72->309 PF00529 * HlyD 2e-07 26.7 %
:HMM:PFM   66->211 PF00529 * HlyD 9.7e-11 26.1 138/306  
:HMM:PFM   210->316 PF00529 * HlyD 2.7e-08 19.0 105/306  
:BLT:SWISS 40->396 CYAD_BORPE 5e-28 29.2 %
:PROS 361->383|PS00543|HLYD_FAMILY
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF70211.1 GT:GENE ACF70211.1 GT:PRODUCT type I secretion membrane fusion protein, HlyD family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 2850885..2852075 GB:FROM 2850885 GB:TO 2852075 GB:DIRECTION + GB:PRODUCT type I secretion membrane fusion protein, HlyD family GB:NOTE identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843 GB:PROTEIN_ID ACF70211.1 GB:DB_XREF GI:194409992 LENGTH 396 SQ:AASEQ MKINQHDAAMDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER GT:EXON 1|1-396:0| BL:SWS:NREP 1 BL:SWS:REP 40->396|CYAD_BORPE|5e-28|29.2|343/440| PROS 361->383|PS00543|HLYD_FAMILY|PDOC00469| COIL:NAA 3 COIL:NSEG 1 COIL:REGION 180->182| TM:NTM 1 TM:REGION 23->45| SEG 106->122|saakyraslassarlta| BL:PDB:NREP 1 BL:PDB:REP 153->343|3fppB|3e-05|26.7|165/267| RP:PDB:NREP 2 RP:PDB:REP 44->103|2edgA|2e-05|15.0|60/130| RP:PDB:REP 243->308|2ejmA|6e-06|9.4|64/99| RP:PFM:NREP 1 RP:PFM:REP 72->309|PF00529|2e-07|26.7|210/259|HlyD| HM:PFM:NREP 2 HM:PFM:REP 66->211|PF00529|9.7e-11|26.1|138/306|HlyD| HM:PFM:REP 210->316|PF00529|2.7e-08|19.0|105/306|HlyD| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF00529|IPR006143| GO:PFM GO:0009306|"GO:protein secretion"|PF00529|IPR006143| GO:PFM GO:0016020|"GO:membrane"|PF00529|IPR006143| RP:SCP:NREP 3 RP:SCP:REP 45->95|1bdoA|9e-06|13.7|51/80|b.84.1.1| RP:SCP:REP 142->223|1wp1A|2e-04|14.8|81/456|f.5.1.1| RP:SCP:REP 244->393|1x8mA|3e-21|17.8|146/259|b.82.1.13| OP:NHOMO 653 OP:NHOMOORG 357 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------1------1-----------------1-1221122-2----------433-221--221--121-1--5662-2--1--2-------------1------------------------------------------------------------------------------------------------------------------------1-----------------1-1------------------------------------------4111----11-574421-1133----------2-33633333341-344336244435212-12-32122532111111111-31141111111111111111111111111111111--1111-221-3111231----1111111-1-111323-----241-1-1-3232114-22332--111111-1311----2131134111--2---11-1--------11111---------------2--11112112-12-1-11211121111112224111--111---------1-211--222-12----2---------2-1-----21--4424222222122222222221--1------211123313222--2-111--1111--112111------------11111211-1113333443225334-133---------131122222232344--1-------11111-4---------------1---------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------3---------1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 58.8 SQ:SECSTR #######################################EEEEEcTTcEEEEEETTEEEEEEcHHHHHHHccEEEEEcccTTcEEcTTcEEEEEEEcccEEEEHH###############################################HHHHHHHHHHHHHHHHHHHHH####HHHHHccccTTHH###HHHHHTHHHHH############HHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccTTEEEccccEEEEEEcEcccEEEEEccccEEEEEEcccTTEEEcTTccccccE###EEccccccc##ccEEccccEEEEEcc##################################################### DISOP:02AL 1-16,134-134,216-232,391-391,394-397| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccEEEEEcccccEEEEEEcccccEEEcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEEEcccccEEccccEEEEEEEcccEEEEEEEEcHHHHHHcccccEEEEEEEcccccEEEEEEEEEEEEEcccccccccccEEEEEEEEEEcHHHHccccccccccccccEEEEEEEEcEEEHHHHHHHHHHHHHHHHccc //