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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : aspS
DDBJ      :aspS         aspartyl-tRNA synthetase
Swiss-Prot:SYD_SALHS    RecName: Full=Aspartyl-tRNA synthetase;         EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase;         Short=AspRS;

Homologs  Archaea  68/68 : Bacteria  910/915 : Eukaryota  197/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.52.1d.104.1
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->590 1eqrA PDBj 0.0 94.4 %
:RPS:PDB   1->585 1c0aA PDBj e-115 94.4 %
:RPS:SCOP  1->106 1c0aA1  b.40.4.1 * 3e-31 97.2 %
:RPS:SCOP  108->315 1c0aA3  d.104.1.1 * 7e-46 86.5 %
:RPS:SCOP  294->404 1hh1A  c.52.1.18 * 7e-22 18.9 %
:RPS:SCOP  407->585 1c0aA3  d.104.1.1 * 2e-30 87.2 %
:HMM:SCOP  1->106 1c0aA1 b.40.4.1 * 7.1e-39 49.1 %
:HMM:SCOP  107->585 1c0aA3 d.104.1.1 * 8.1e-118 38.0 %
:RPS:PFM   18->78 PF01336 * tRNA_anti 5e-07 42.4 %
:RPS:PFM   118->307 PF00152 * tRNA-synt_2 2e-54 57.6 %
:RPS:PFM   307->406 PF02938 * GAD 2e-28 67.4 %
:RPS:PFM   399->557 PF00152 * tRNA-synt_2 4e-32 45.3 %
:HMM:PFM   118->558 PF00152 * tRNA-synt_2 4e-130 60.1 311/323  
:HMM:PFM   18->102 PF01336 * tRNA_anti 7.5e-19 33.8 74/76  
:BLT:SWISS 1->590 SYD_SALHS 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67356.1 GT:GENE aspS GT:PRODUCT aspartyl-tRNA synthetase GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2043451..2045223) GB:FROM 2043451 GB:TO 2045223 GB:DIRECTION - GB:GENE aspS GB:PRODUCT aspartyl-tRNA synthetase GB:NOTE identified by match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459 GB:PROTEIN_ID ACF67356.1 GB:DB_XREF GI:194407137 GB:GENE:GENE aspS LENGTH 590 SQ:AASEQ MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDAKNVNADMATGEIEVLASSLTIINRADSLPLDANHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELVDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGAQLSRKQIDDYGNFVKIYGAKGLAYIKVNERAKGLDGINSPVAKFLTADIVDAILERTGAQDGDMIFFGADNKKVVADALGALRLKLGKDLSLTDEDKWAPLWVIDFPMFEDDGEGGLTAMHHPFTAPRDMTASELKTAPEEAVANAYDMVINGYEVGGGSVRIHNGEMQQTVFGILGINEQEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANQAALTELGIQVVKKAENN GT:EXON 1|1-590:0| SW:ID SYD_SALHS SW:DE RecName: Full=Aspartyl-tRNA synthetase; EC=6.1.1.12;AltName: Full=Aspartate--tRNA ligase; Short=AspRS; SW:GN Name=aspS; OrderedLocusNames=SeHA_C2115; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->590|SYD_SALHS|0.0|100.0|590/590| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 1->590|1eqrA|0.0|94.4|590/590| RP:PDB:NREP 1 RP:PDB:REP 1->585|1c0aA|e-115|94.4|585/585| RP:PFM:NREP 4 RP:PFM:REP 18->78|PF01336|5e-07|42.4|59/74|tRNA_anti| RP:PFM:REP 118->307|PF00152|2e-54|57.6|184/337|tRNA-synt_2| RP:PFM:REP 307->406|PF02938|2e-28|67.4|95/96|GAD| RP:PFM:REP 399->557|PF00152|4e-32|45.3|139/337|tRNA-synt_2| HM:PFM:NREP 2 HM:PFM:REP 118->558|PF00152|4e-130|60.1|311/323|tRNA-synt_2| HM:PFM:REP 18->102|PF01336|7.5e-19|33.8|74/76|tRNA_anti| GO:PFM:NREP 17 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF02938|IPR004115| GO:PFM GO:0005524|"GO:ATP binding"|PF02938|IPR004115| GO:PFM GO:0005737|"GO:cytoplasm"|PF02938|IPR004115| GO:PFM GO:0006412|"GO:translation"|PF02938|IPR004115| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00152|IPR004364| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00152|IPR004364| GO:PFM GO:0005524|"GO:ATP binding"|PF00152|IPR004364| GO:PFM GO:0005737|"GO:cytoplasm"|PF00152|IPR004364| GO:PFM GO:0006412|"GO:translation"|PF00152|IPR004364| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00152|IPR004364| RP:SCP:NREP 4 RP:SCP:REP 1->106|1c0aA1|3e-31|97.2|106/106|b.40.4.1| RP:SCP:REP 108->315|1c0aA3|7e-46|86.5|208/346|d.104.1.1| RP:SCP:REP 294->404|1hh1A|7e-22|18.9|106/125|c.52.1.18| RP:SCP:REP 407->585|1c0aA3|2e-30|87.2|179/346|d.104.1.1| HM:SCP:REP 1->106|1c0aA1|7.1e-39|49.1|106/0|b.40.4.1|1/1|Nucleic acid-binding proteins| HM:SCP:REP 107->585|1c0aA3|8.1e-118|38.0|347/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 3077 OP:NHOMOORG 1175 OP:PATTERN 11212121111111112322222111111111111111111112212211222122222222212122 3322323222231233333-33333333333333333333212322221222222322112232323111222222222222122222222222221-13222232323222222222222222122222222222333333343233323322233222222332233222222222222224334422333344444434343444333333344433323333333333233333333333333233333332433433233333333323332223333333444333333333333333333333333433333333323355444443444333333343633223342233333232222222333223111111111111111111111111111111111-1111111111122222222222221111111111111111111111111111111211111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222322222222222233333333332332334323232333332344221222222222222222222222222333322233332222222222223222222212122222222233343333333334333-33333333333333333334442233333333333333333333223222322333333333333223322222222222222222223223222432222222222222222222222222222222222222222322222222232222222222222222222222233331111111122222222-12222323332332312223333323222232 3522444-B4421344343433444433433243333233244444344444553344445455434535345445536654454544-483334344432244452546757336B2354453782C4AT518794211834774324352383534334333333544545444444X6433464BA3733454333 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 590 STR:RPRED 100.0 SQ:SECSTR cccccGGGccGGGTTcEEEEEEEEEEEEEccccEEEEEEETTEEEEEEEcGGGHHHHHHHTTccTTcEEEEEEEEEEccTTTccTTcTTTTEEEEEEEEEEEEccccccccTTccccHHHHHHTHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHTTcEEcccccccccccccccccEEEccccTTcEEEcccccHHHHHHHHHTTccEEEEEEEEEccccccTTcccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEHHHHHHHHccccccTTccccEEEcHHHHTTcccHHHHHHHHcTTEEEEEEEETTGGGccHHHHHHHHHHHHHTTcccccEEEEccGGGGGGGEEcTTGGGccHHHHHHHHHHTTccTTcEEEEEEEEHHHHHHHHHHHHHHHHHHTTccccccccEEEEEccccEEEcccccEEEcccTTcccccccHHHHHHccTTccccEEEEEETTEEEEEEEEccccHHHHHHHHHHTTccHHHHHHHHHHHHHHTTTTcccEEEEEEEHHHHHHHHHTcccGGGGccccccTTcccTTTTccccccHHHHHHTTcccccccccc DISOP:02AL 561-570,586-591| PSIPRED cccccHHHccHHHcccEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEEcccccHHHHHHHcccccEEEEEEEEEEEccccccccccccEEEEEEEEEEEEcccccccccccccccHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEcccccccccEEEEEEcccccEEccccccHHHHHHHHHcccccEEEEEEEEccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcccccccccccEEEEHHHHHHHcccHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHccHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccEEEccccccccccccHHHHcccccccEEEEEEEEEccEEEEEEHEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEEEcHHHHHHHHHccccHHHEEccccccccccccccccccccHHHHHHcccEEccccccc //