[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : bioD2
DDBJ      :bioD2        dethiobiotin synthase
Swiss-Prot:BIOD2_SALTY  RecName: Full=Probable dethiobiotin synthetase 2;         Short=Dethiobiotin synthase 2;         Short=DTB synthetase 2;         Short=DTBS 2;         EC=6.3.3.3;

Homologs  Archaea  5/68 : Bacteria  343/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:231 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->220 1byiA PDBj 5e-55 48.2 %
:RPS:PDB   3->211 1daeA PDBj 1e-30 50.2 %
:RPS:SCOP  3->220 1a82A  c.37.1.10 * 5e-24 50.5 %
:HMM:SCOP  1->218 1byiA_ c.37.1.10 * 2.3e-49 41.0 %
:HMM:PFM   6->196 PF01656 * CbiA 1.7e-18 26.4 163/194  
:BLT:SWISS 1->231 BIOD2_SALTY e-128 99.6 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF66389.1 GT:GENE bioD2 GT:PRODUCT dethiobiotin synthase GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 1613587..1614282 GB:FROM 1613587 GB:TO 1614282 GB:DIRECTION + GB:GENE bioD2 GB:PRODUCT dethiobiotin synthase GB:NOTE identified by match to protein family HMM PF01656; match to protein family HMM TIGR00347 GB:PROTEIN_ID ACF66389.1 GB:DB_XREF GI:194406170 GB:GENE:GENE bioD2 LENGTH 231 SQ:AASEQ MLKRFFITGTDTSVGKTVVSRALLQALASGGKSVAGYKPVAKGSKETAEGMRNKDALVLQSVSSLELPYEAINPIALSEEESSVAHSCPINYTLLSNGLASLSDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAVANDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLSMLGSVLAVDRIMA GT:EXON 1|1-231:0| SW:ID BIOD2_SALTY SW:DE RecName: Full=Probable dethiobiotin synthetase 2; Short=Dethiobiotin synthase 2; Short=DTB synthetase 2; Short=DTBS 2; EC=6.3.3.3; SW:GN Name=ynfK; OrderedLocusNames=STM1489; SW:KW ATP-binding; Biotin biosynthesis; Complete proteome; Ligase;Magnesium; Nucleotide-binding. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->231|BIOD2_SALTY|e-128|99.6|231/231| GO:SWS:NREP 4 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0009102|"GO:biotin biosynthetic process"|Biotin biosynthesis| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| BL:PDB:NREP 1 BL:PDB:REP 3->220|1byiA|5e-55|48.2|218/224| RP:PDB:NREP 1 RP:PDB:REP 3->211|1daeA|1e-30|50.2|209/219| HM:PFM:NREP 1 HM:PFM:REP 6->196|PF01656|1.7e-18|26.4|163/194|CbiA| RP:SCP:NREP 1 RP:SCP:REP 3->220|1a82A|5e-24|50.5|218/224|c.37.1.10| HM:SCP:REP 1->218|1byiA_|2.3e-49|41.0|217/224|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 445 OP:NHOMOORG 352 OP:PATTERN ------------------------------------11----1-----------------------11 -----------------------------------------------------------------------------------1-111-1---1-------1-1--1-----------------------1---------------1--1---------1-1-----1----1-1------------------1-----111111-111-1---1-111--1----------1-----------------------------------------1------------------------------------------------1--1-------------11111---1-----1---1-1--------1-1--11---------1------1------------------1-----1-2-----------------------------------------1-------------------------------------1----111111111111111111111-1111111-111111---111-1-1111111111111111111111-1------------1111111111---------------------------------221111111111111111111111111111111--1111-1-1-122222222222222222-22222222222222222222222222222222222222222222222222221222222212222--1111-11111111111222111222222--11-1111----1111111111111111111111111111111111111111111111111111111111--1------------------------------------------------------1 ---------------------------------------------------------------------------------11----1---------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 98.3 SQ:SECSTR ccEEEEEEEccTTccHHHHHHHHHHHHHHTTccEEEEccEEEccEEETTEEEcHHHHHHHHHccccccHHHHccEEEcccHHHHHHTccccHHHHHHHHHHHHTTccEEEEEccccTTccccccccHHHHHHHHTccEEEEEEccTTHHHHHHHHHHHHHHTTccEEEEEEEccccccTTHHHHHHHHHHHccccEEEEEcccccccGGGccGGccGGGcTcHHHHH#### DISOP:02AL 1-1| PSIPRED cccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHcccccHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEccccccccccccccHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHcccHHHcccccHHHHcc //