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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : clpV
DDBJ      :clpV         type VI secretion ATPase, ClpV1 family
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  892/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
a.174.1c.37.1d.322.1
:879 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   192->869 1qvrA PDBj e-102 40.0 %
:RPS:PDB   193->317 3bbnG PDBj 1e-24 9.6 %
:RPS:PDB   343->447 2eefA PDBj 6e-25 6.1 %
:RPS:PDB   530->735 2ce4B PDBj 7e-25 8.8 %
:RPS:PDB   720->844 1b94A PDBj 4e-17 5.8 %
:RPS:SCOP  13->146 1qvrA1  a.174.1.1 * 4e-14 13.5 %
:RPS:SCOP  192->466 1qvrA2  c.37.1.20 * 6e-98 52.5 %
:RPS:SCOP  595->652 1l8qA2  c.37.1.20 * 3e-07 13.8 %
:RPS:SCOP  643->784 2o8rA2  d.322.1.2 * 2e-28 17.1 %
:RPS:SCOP  781->865 1qzmA  c.37.1.20 * 7e-08 17.9 %
:HMM:SCOP  12->130 1khyA_ a.174.1.1 * 3.8e-14 28.8 %
:HMM:SCOP  191->558 1qvrA2 c.37.1.20 * 1.5e-74 34.8 %
:HMM:SCOP  559->865 1qvrA3 c.37.1.20 * 9e-68 34.3 %
:RPS:PFM   236->366 PF00004 * AAA 1e-06 36.3 %
:RPS:PFM   610->777 PF07724 * AAA_2 7e-16 40.0 %
:HMM:PFM   609->776 PF07724 * AAA_2 1.2e-41 42.9 154/171  
:HMM:PFM   236->368 PF00004 * AAA 8.4e-12 32.2 115/130  
:HMM:PFM   788->868 PF10431 * ClpB_D2-small 6.8e-14 25.6 78/89  
:BLT:SWISS 5->852 CLPB_YEREN 0.0 58.5 %
:PROS 327->339|PS00870|CLPAB_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF65835.1 GT:GENE clpV GT:PRODUCT type VI secretion ATPase, ClpV1 family GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION 318961..321600 GB:FROM 318961 GB:TO 321600 GB:DIRECTION + GB:GENE clpV GB:PRODUCT type VI secretion ATPase, ClpV1 family GB:NOTE identified by match to protein family HMM PF00004; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03345 GB:PROTEIN_ID ACF65835.1 GB:DB_XREF GI:194405616 GB:GENE:GENE clpV LENGTH 879 SQ:AASEQ METPVSRSALYGKLAGPLFRSLESATAFCKLRSNPWVELTHWLHQLTQQPDNDILHVLRHYQIPLSDVEKALLRQLDMLPAGASAISDFSHHIDLSVEKAWMLASVRYGDNKIRSGWLLLALLTTPELRRVLSSICAPLATLPVDELTEILPSLIETSPEAQERPYDGSGLASAIPGESSQAIPNGGQDGKSALAKYCQDMTAQARDGKIDPVTGREHEIRTMTDILLRRRQNNPLLTGEAGVGKTAVVEGFALAIAQGEVPPALREVRLLALDVGALLAGASMKGEFESRLKGLLEEAGRSPQPVILFVDEVHTLVGAGGASGTGDAANLLKPALARGTLRTIGATTWSEYKRHIEKDPALTRRFQVLQIAEPEEIPAMEMVRGLVDTLEKHHNVLILDEAVRAAVQLSHRYIPARQLPDKAISLLDTAAARVALTLHTPPASVQFLRQQLKAAEMERSLLQKQEKMGIQSDERRDALTARIFSLNNELTASESRWQRELELVHTLQELRVAESDADDKTTLQQAETALREWQGDAPVVFPEVSAAVVAAIVADWTGIPAGRMVKDEASQVLELPARLAQRVTGQDGALAQIGERIQTARAGLGDPRKPVGVFMLAGPSGVGKTETALALAEAIYGGEQNLVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRHPWSVVLLDEIEKAHHDVHELFYQVFDKGGMEDGEGTHVDFKNTTLLLTTNVGSDLISQMCEDPALMPDATGLKEALMPELRKHFPAAFLGRVTVIPYLPLDEPSRGVIARLHLDRLVARMGEQHGVTLTYSEELVAHIVACCPMHETGARLLIGYIEQHILPRLSRYWLQAMTEKAAIRQIDIGVNGDEQIVFEIVC GT:EXON 1|1-879:0| BL:SWS:NREP 1 BL:SWS:REP 5->852|CLPB_YEREN|0.0|58.5|843/890| PROS 327->339|PS00870|CLPAB_1|PDOC00679| SEG 118->123|lllall| SEG 270->282|llaldvgallaga| SEG 318->329|gaggasgtgdaa| SEG 544->554|vsaavvaaiva| SEG 661->674|gappgyvgygeggv| BL:PDB:NREP 1 BL:PDB:REP 192->869|1qvrA|e-102|40.0|627/803| RP:PDB:NREP 4 RP:PDB:REP 193->317|3bbnG|1e-24|9.6|125/154| RP:PDB:REP 343->447|2eefA|6e-25|6.1|99/156| RP:PDB:REP 530->735|2ce4B|7e-25|8.8|194/206| RP:PDB:REP 720->844|1b94A|4e-17|5.8|120/244| RP:PFM:NREP 2 RP:PFM:REP 236->366|PF00004|1e-06|36.3|113/123|AAA| RP:PFM:REP 610->777|PF07724|7e-16|40.0|150/160|AAA_2| HM:PFM:NREP 3 HM:PFM:REP 609->776|PF07724|1.2e-41|42.9|154/171|AAA_2| HM:PFM:REP 236->368|PF00004|8.4e-12|32.2|115/130|AAA| HM:PFM:REP 788->868|PF10431|6.8e-14|25.6|78/89|ClpB_D2-small| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 5 RP:SCP:REP 13->146|1qvrA1|4e-14|13.5|133/145|a.174.1.1| RP:SCP:REP 192->466|1qvrA2|6e-98|52.5|244/357|c.37.1.20| RP:SCP:REP 595->652|1l8qA2|3e-07|13.8|58/213|c.37.1.20| RP:SCP:REP 643->784|2o8rA2|2e-28|17.1|129/184|d.322.1.2| RP:SCP:REP 781->865|1qzmA|7e-08|17.9|84/94|c.37.1.20| HM:SCP:REP 12->130|1khyA_|3.8e-14|28.8|118/0|a.174.1.1|1/1|Double Clp-N motif| HM:SCP:REP 191->558|1qvrA2|1.5e-74|34.8|365/0|c.37.1.20|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 559->865|1qvrA3|9e-68|34.3|303/315|c.37.1.20|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2896 OP:NHOMOORG 1076 OP:PATTERN ----------------------------------1--------11--2-1------------------ 2372422244222222222-22222222222222223444243232222222323232224322236443222223222224322222432312223--2232224232222222222222222333333333333444452226234334442233333333333454563333333333333332222123222222222222222222222222233322223333332153333323333333332222333334333334433444543433333363333344333333333333333333334333543333333332243222222223222333222233421222222212211111112213332222422222233232222222322222222223-24224432232233332342222232222234323322233333333333322222222222222--11111111111112122-2223233324755356558887566888837634555322323323223322422232322322222222222233222222232332222111122131335398222112222222222222222222122223334434222322222232222222222331-22222------24233232333244443-3123223325343222223433336533433432333333332422222232-3777777477761122222222222236331111211111111113333333222428888344454344343311111111124343333333443322324224452222222233333322222212331----1-11111111111111--1112223332233242 33--223-73212222222222222222222222222222322222222222222222222223222222222222212222122222-2722223222223134412A321111-11111111311313B1-21211112111--11--11121-1121--1112-------2145B5t44454B8AE28A4653423 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 741 STR:RPRED 84.3 SQ:SECSTR ############################################################################################################HHHHTEEEEEEEEEEEEccGGGcccccEEEEEEEEETT##EEEEEEEEEcTTTccEEEEE##################EEEEEEccTTTcccGGGHHHHcccTTcHHHHHHHcHHHHTTTTTccccTTHHHHHHGGGTcccEEEccEEETTccEEEccHHHHHHHHTTHHHHHHHTcccHHHHHHHHHHHHHHTcHHHHHHHHHHHHHccTTTccHHHHHHHHHHHHHGGGccccccTTcHHHHHHHHHHccEEEEEEEEEEcETTEEEEEEEEccccTcccccEEEEEEEccTTccEEEEEcEEcccEEEEcccccccccTTcccEEEEEEEETTEEEHHHTTTcccccTTTTTHHHHHHHHHHTcGGGcGGGTTTcHTEEETcccTTcccccEEEEEEEEEccGccccTTccGGGGTcccccccccTTTTTTTccHHHHHHHHHTHHHHHHHHHHHHHTcTcTTccccHHHHTTcGGGccHHHHHHHHHHHHHHHHHHHHTEEHHTcccccccccHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHcccccEEEEEEEETTEEEEHHEEEETTccGGGcHHHHccccEEEEEEEccGGGTHHHHTTcHHHHHHHHGGGccHHHHccEEEEGGGETcccEEEEEEcTTccccccEEccTTTTTcEEcTTcEEEEEEEEEEcTTcGGGcEEEEcHHHTTcGGGGGGcccEEEEEccGGGGcccHHHHHHHHHHHcccHHHHHHcccccEEccccETTccc########## DISOP:02AL 1-2,77-91,158-195,439-439,442-446,468-470,511-543,604-604| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEccHHHHccccccccHHHHHHHHHHHHccccEEEEEccccHHHHcHHcccHHHHccccEEEcccccHHHHHHHHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHccccccccccccccHHHHHHHcccccEEEEEcHHHccHHHHHHHHHHHHHccccccccEEEccccEEEEEEccccHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccccEEEEEEcc //