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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : cyoA
DDBJ      :cyoA         ubiquinol oxidase, subunit II
Swiss-Prot:CYOA_ECOLI   RecName: Full=Ubiquinol oxidase subunit 2;         EC=1.10.3.-;AltName: Full=Ubiquinol oxidase polypeptide II;AltName: Full=Cytochrome o subunit 2;AltName: Full=Oxidase BO(3) subunit 2;AltName: Full=Cytochrome o ubiquinol oxidase subunit 2;         Short=Ubiquinol oxidase chain B;Flags: Precursor;

Homologs  Archaea  17/68 : Bacteria  448/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
b.6.1f.17.2
:309 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->273 1fftB PDBj e-145 96.9 %
:RPS:PDB   116->273 1cywA PDBj 5e-38 94.9 %
:RPS:SCOP  18->108 1fftB2  f.17.2.1 * 5e-49 100.0 %
:RPS:SCOP  116->273 1cywA  b.6.1.2 * 1e-38 94.9 %
:HMM:SCOP  18->108 1fftB2 f.17.2.1 * 2.3e-23 30.8 %
:HMM:SCOP  109->274 1fftB1 b.6.1.2 * 2e-57 38.0 %
:RPS:PFM   118->209 PF00116 * COX2 2e-09 34.8 %
:RPS:PFM   230->273 PF06481 * COX_ARM 9e-11 60.5 %
:HMM:PFM   230->277 PF06481 * COX_ARM 5.4e-21 51.1 47/47  
:HMM:PFM   139->212 PF00116 * COX2 7.6e-10 29.7 74/120  
:HMM:PFM   34->99 PF07895 * DUF1673 0.00029 24.6 61/205  
:BLT:SWISS 1->306 CYOA_ECOLI e-163 91.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF67039.1 GT:GENE cyoA GT:PRODUCT ubiquinol oxidase, subunit II GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(544314..545243) GB:FROM 544314 GB:TO 545243 GB:DIRECTION - GB:GENE cyoA GB:PRODUCT ubiquinol oxidase, subunit II GB:NOTE identified by match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433 GB:PROTEIN_ID ACF67039.1 GB:DB_XREF GI:194406820 GB:GENE:GENE cyoA LENGTH 309 SQ:AASEQ MGWLSLIAGTALLSGCNSALLDPKGQIGLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGMKFKAIATKDRAEFDQWVAKAKQSPNTMNDMAAFEKVAMPSEYNKVEYFSSVKPDLFKDVINKFMDHGKSMDMTQPEGEHSSHEGMEGMDMSHAESANSKG GT:EXON 1|1-309:0| SW:ID CYOA_ECOLI SW:DE RecName: Full=Ubiquinol oxidase subunit 2; EC=1.10.3.-;AltName: Full=Ubiquinol oxidase polypeptide II;AltName: Full=Cytochrome o subunit 2;AltName: Full=Oxidase BO(3) subunit 2;AltName: Full=Cytochrome o ubiquinol oxidase subunit 2; Short=Ubiquinol oxidase chain B;Flags: Precursor; SW:GN Name=cyoA; OrderedLocusNames=b0432, JW0422; SW:KW 3D-structure; Cell inner membrane; Cell membrane; Complete proteome;Direct protein sequencing; Electron transport; Lipoprotein; Membrane;Oxidoreductase; Palmitate; Respiratory chain; Signal; Transmembrane;Transport. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->306|CYOA_ECOLI|e-163|91.5|306/315| GO:SWS:NREP 9 GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0022900|"GO:electron transport chain"|Electron transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0070469|"GO:respiratory chain"|Respiratory chain| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| GO:SWS GO:0006810|"GO:transport"|Transport| TM:NTM 3 TM:REGION 1->22| TM:REGION 33->55| TM:REGION 78->100| SEG 285->297|egehsshegmegm| BL:PDB:NREP 1 BL:PDB:REP 18->273|1fftB|e-145|96.9|256/257| RP:PDB:NREP 1 RP:PDB:REP 116->273|1cywA|5e-38|94.9|158/159| RP:PFM:NREP 2 RP:PFM:REP 118->209|PF00116|2e-09|34.8|92/119|COX2| RP:PFM:REP 230->273|PF06481|9e-11|60.5|43/47|COX_ARM| HM:PFM:NREP 3 HM:PFM:REP 230->277|PF06481|5.4e-21|51.1|47/47|COX_ARM| HM:PFM:REP 139->212|PF00116|7.6e-10|29.7|74/120|COX2| HM:PFM:REP 34->99|PF07895|0.00029|24.6|61/205|DUF1673| GO:PFM:NREP 7 GO:PFM GO:0004129|"GO:cytochrome-c oxidase activity"|PF00116|IPR002429| GO:PFM GO:0005507|"GO:copper ion binding"|PF00116|IPR002429| GO:PFM GO:0016020|"GO:membrane"|PF00116|IPR002429| GO:PFM GO:0008827|"GO:cytochrome o ubiquinol oxidase activity"|PF06481|IPR010514| GO:PFM GO:0016021|"GO:integral to membrane"|PF06481|IPR010514| GO:PFM GO:0022900|"GO:electron transport chain"|PF06481|IPR010514| GO:PFM GO:0055114|"GO:oxidation reduction"|PF06481|IPR010514| RP:SCP:NREP 2 RP:SCP:REP 18->108|1fftB2|5e-49|100.0|91/91|f.17.2.1| RP:SCP:REP 116->273|1cywA|1e-38|94.9|158/159|b.6.1.2| HM:SCP:REP 18->108|1fftB2|2.3e-23|30.8|91/91|f.17.2.1|1/1|Cytochrome c oxidase subunit II-like, transmembrane region| HM:SCP:REP 109->274|1fftB1|2e-57|38.0|166/166|b.6.1.2|1/1|Cupredoxins| OP:NHOMO 623 OP:NHOMOORG 468 OP:PATTERN ------1111111111--------211111-------------------------------1------ --2-----------------------------------------------------1------1--------------------------------------------1---------------11----------11111----113211111---11111-21-1433---1------------11---22122222222222222222222122212222111111113211111111111111111111--------------------------------------------------------------------------------------------------1---------------------1-1-11211111--333111-112111111111111-22231222311121112211323211---1-11111-1-11111111211121--1111111111---111------11-11-1----2-122132222222222222253333221332333--222-11111---2-11--2--1---------1121-1-----11-1-111-1-1-1111-221222---------------------------221113----22-1-111-21111121121-211-1---11111111111111111111111-1111111111111111111111111111111111111111111111----111111111111111111-111111211-1-11---------------1111111---2122222221111111111-11111111-1--------21---22111112221111-1--111111-----------------------------------------------2- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 256 STR:RPRED 82.8 SQ:SECSTR #################ccccccccccHHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTcTTTcccccccccccHHHHHHHHHHHHHHHHHHHHcccccTTTTTTcccccccccEEEEEEEETTEEEEEETTTTEEEEcEEEEETTcEEEEEEEEccccEEEEEGGGTEEEEEcTTccEEEEEEccccEEEEEcccccccTTTTTccEEEEEEccHHHHHHHHHHHHTcccccccHHHHHHHHccccccccEEEccccTTHHHHHHGGGc#################################### DISOP:02AL 227-243,277-310| PSIPRED ccHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEEEEEEEccccccEEEEEEEccccEEEEEEEEcccHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEEcccccccccEEEEEEccHHHHHHHHHHHHHcccccccHHHHHHHHccccccccEEEccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccHHHHccc //