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Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 (sent8)
Gene : gtdA
DDBJ      :gtdA         gentisate 1,2-dioxygenase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  80/915 : Eukaryota  18/199 : Viruses  0/175   --->[See Alignment]
b.82.1
:345 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->345 2d40A PDBj e-140 88.0 %
:RPS:PDB   10->345 3bu7A PDBj 4e-44 32.7 %
:RPS:SCOP  38->345 2d40A1  b.82.1.23 * e-118 85.5 %
:HMM:SCOP  7->339 1j58A_ b.82.1.2 * 4.5e-47 22.4 %
:RPS:PFM   100->157 PF02311 * AraC_binding 7e-06 35.1 %
:HMM:PFM   95->162 PF07883 * Cupin_2 2.2e-27 40.3 67/71  
:HMM:PFM   264->327 PF07883 * Cupin_2 2.9e-08 25.0 64/71  
:HMM:PFM   11->49 PF11060 * DUF2861 0.00041 23.1 39/257  
:BLT:SWISS 70->159 GL92_ORYSJ 4e-04 32.9 %
:REPEAT 2|33->159|201->324
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACF69921.1 GT:GENE gtdA GT:PRODUCT gentisate 1,2-dioxygenase GT:DATABASE GIB00763CH01 GT:ORG sent8 GB:ACCESSION GIB00763CH01 GB:LOCATION complement(2321937..2322974) GB:FROM 2321937 GB:TO 2322974 GB:DIRECTION - GB:GENE gtdA GB:PRODUCT gentisate 1,2-dioxygenase GB:NOTE identified by match to protein family HMM PF07883; match to protein family HMM TIGR02272 GB:PROTEIN_ID ACF69921.1 GB:DB_XREF GI:194409702 GB:GENE:GENE gtdA LENGTH 345 SQ:AASEQ MSEINQNVKDSRQQYYQHISGQNLTPLWESLHHLVPQTPNANCAPAYWNYQEIRPLLMESGNVIGAKEAIRRVLVLENPALRGQSSITATLYAGLQLILPGEVAPSHRHNQSALRFIVEGKGAFTAVDGERTPMHTGDFILTPQWRWHDHGNPGSEPVVWLDGLDLPLVNLLGCGFAEDYPEDQQPVTRKEGDYLPRYAANMLPLRHQRGNSSPIFNYRYDRSREALHDLTRMGDPDEWEGYKLRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARSTDSTIYHVVEGAGQVTIGNETFHFSAKDIFVAPTWHEVSFRSSEDTVLFSFSDKPVQEALGLFREARY GT:EXON 1|1-345:0| BL:SWS:NREP 1 BL:SWS:REP 70->159|GL92_ORYSJ|4e-04|32.9|85/100| NREPEAT 1 REPEAT 2|33->159|201->324| SEG 161->173|ldgldlplvnllg| BL:PDB:NREP 1 BL:PDB:REP 38->345|2d40A|e-140|88.0|283/283| RP:PDB:NREP 1 RP:PDB:REP 10->345|3bu7A|4e-44|32.7|336/355| RP:PFM:NREP 1 RP:PFM:REP 100->157|PF02311|7e-06|35.1|57/130|AraC_binding| HM:PFM:NREP 3 HM:PFM:REP 95->162|PF07883|2.2e-27|40.3|67/71|Cupin_2| HM:PFM:REP 264->327|PF07883|2.9e-08|25.0|64/71|Cupin_2| HM:PFM:REP 11->49|PF11060|0.00041|23.1|39/257|DUF2861| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02311|IPR003313| RP:SCP:NREP 1 RP:SCP:REP 38->345|2d40A1|e-118|85.5|289/289|b.82.1.23| HM:SCP:REP 7->339|1j58A_|4.5e-47|22.4|304/0|b.82.1.2|1/1|RmlC-like cupins| OP:NHOMO 129 OP:NHOMOORG 101 OP:PATTERN --------1---11------------------------------------------------------ -------1111----------2----------1121--11------------1-1----------1-------------------------------------------------------------------------------------------------------------------------------------------1----2---------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------212--1-------------------------3---1-------------1---11------2------------------------------------------------31-3---2-1111------11--------1-2-21-----22-1--132-21-------------------21-------------------------------------------------------------------------------------------------------1-------11-----1--1---------1----------------1-111111111111111--------------------------------------1------------------------1--11111------------------------------------------------------------------------------------------------------------- --------------------1--1111---------1------------12232111-----------------2---------1------------------1------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 336 STR:RPRED 97.4 SQ:SECSTR #########HHHHHHHHHHHHTTcccGGGccGGGccccccccccccEEcHHHHHHHHHHHHHHccccccccccEEcccGGGGGGTcccTTcEEEEEEEcTTcccccEEEcccEEEEEEEcccEEEEETTEEEEEcTTcEEEEcTTccEEEEEcTTcccEEEEEEcHHHHHHTTcccEEEcTTccccccccTTHHHHHHccTTccccccccccccccEEcHHHHHHHHHHHHTTccccTTTcEEEEcccTTTccccccccEEEEEEEcTTcccccEEEcccEEEEEEEccEEEEETTEEEEEcTTcEEEEcTTccEEEEEccccEEEEEEcHHHHHHTTcccEEEc DISOP:02AL 1-11| PSIPRED cccccccccccHHHHHHHHHHccccccHHHHHHcccccccccEEEEEEEHHHHHHHHHHHHccccHHHccEEEEEEEcccccccccccHHHHEEEEEEccccccHHHcccHHHEEEEEEcccEEEEEccEEEEEccccEEEEcccEEccccccccccEEEEEcccHHHHHHccccccccccHHHcccccccccHHHHcccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEEccccccccHHHHHEEEEEcccccccccccccccEEEEEEEEEEEEEEccEEEEEccccEEEEccccEEEEEEcccEEEEEEccHHHHHHHcHHHHccc //